myRT

myRT report for GCA_014596165.1_ASM1459616v1

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Seq: JACFAE010000039.1 (3247 bp)
Overview 1 RT 1: 272-2426 bp Neighborhood of RT #1 [272, 2980] L1-EN RVT-UNC Feature: gene Location: 272-2980 bp Feature: domain Description: L1-EN Location: 284-860 bp Feature: domain Description: L1 -EN Location: 284-860 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1787-2426 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 787-2426 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: JACFAE010000051.1 (2481 bp)
Overview 1 RT 1: 3-2241 bp Neighborhood of RT #1 [3, 2480] Retrotrans_gag ZnF_C2HC RVP_2 RVT-UNC Feature: gene Location: 3-1073 bp Feature: domain Description: Retrotrans_gag Location: 336-618 bp Feature: domain Description: Retrotrans_gag Location: 336-618 bp Feature: domain Description: ZnF_C2HC Location: 996-1044 bp Feature: domain Description: ZnF_C2 HC Location: 996-1044 bp Feature: gene Location: 1116-2480 bp Feature: domain Description: RVP_2 Location: 1122-1488 bp Feature: domain Description: RVP_2 Location: 112 2 -1488 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2052-2241 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2 052 -2 2 41 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Retrotrans_gag (pfam03732), ZnF_C2HC (smart00343), RVP_2 (pfam08284), RVT-G2L4/RVT-G2Lb/RVT-UG17/RVT-UG26(RVT-UNC)

Seq: JACFAE010000342.1 (357 bp)
Overview 1 RT 1: 12-357 bp Neighborhood of RT #1 [12, 356] RVT-GII Feature: gene Location: 12-356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270-357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270-3 57 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACFAE010000203.1 (561 bp)
Overview 1 RT 1: 3-553 bp Neighborhood of RT #1 [3, 558] RVT-UNC RT_LTR Feature: gene Location: 3-197 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 15-195 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 15-195 bp Feature: gene Location: 292-558 bp Feature: domain Description: RT_LTR Location: 373-553 bp Feature: domain Description: RT_LTR Location: 373-553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2Lb/RVT-UG26/RVT-G2L4/RVT-UG11(RVT-UNC), RT_LTR (cd01647)