myRT

myRT report for GCA_014596255.1_ASM1459625v1

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Seq: JACFAH010000009.1 (233377 bp)
Overview 1 RT 1: 63587-72431 bp 2 RT 2: 88696-99940 bp Neighborhood of RT #1 [63587, 72439] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [88696, 99945] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD zf-C4_Topoisom Feature: gene Location: 63587-64261 bp Feature: domain Description: NTP_transferase_like_1 Location: 63593-64232 bp Feature: domain Description: NTP_transferase_like_1 Location: 63593-64232 bp Feature: gene Location: 64258-65274 bp Feature: domain Description: COG3178 Location: 64261-65260 bp Feature: domain Description: COG31 78 Location: 64261 -65260 bp Feature: gene Location: 66547-68259 bp Feature: domain Description: RVT_N Location: 66604-66847 bp Feature: domain Description: RVT_N Location: 66604-66847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66892-67528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66892-67528 bp Feature: domain Description: YkfC Location: 67738-67888 bp Feature: domain Description: YkfC Location: 67738-67888 bp Feature: domain Description: HNH Note: nucleases Location: 68065-68203 bp Feature: domain Description: HNH Note: nucleases Location: 68065-68203 bp Feature: gene Location: 68392-71166 bp Feature: domain Description: LptD Location: 68587-71152 bp Feature: domain Description: LptD Location: 68587-71 1 52 bp Feature: gene Location: 71225-72439 bp Feature: domain Description: PRK10770 Location: 71237-72431 bp Feature: domain Description: PRK1 0770 Location: 71 237-72431 bp Feature: gene Location: 88696-90549 bp Feature: domain Description: PRK05658 Location: 88708-90547 bp Feature: domain Description: PRK05658 Location: 88708-90547 bp Feature: gene Location: 90656-94393 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 90764-91421 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 90764-91 421 bp Feature: domain Description: PRK09776 Location: 91634-92105 bp Feature: domain Description: PRK09776 Location: 91 634-921 05 bp Feature: domain Description: PAS Location: 92162-92687 bp Feature: domain Description: PAS Location: 921 62-92687 bp Feature: domain Description: PRK10060 Location: 92699-94343 bp Feature: domain Description: PRK1 0060 Location: 92699-94343 bp Feature: gene Location: 95474-97159 bp Feature: domain Description: RVT_N Location: 95531-95771 bp Feature: domain Description: RVT_N Location: 95531 -95771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95819-96455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9581 9-96455 bp Feature: domain Description: GIIM Note: maturase Location: 96509-96740 bp Feature: domain Description: GIIM Note: maturase Location: 96509-96740 bp Feature: domain Description: HNH Note: nucleases Location: 96992-97130 bp Feature: domain Description: HNH Note: nucleases Location: 96992-971 30 bp Feature: gene Location: 97882-99003 bp Feature: domain Description: COG3177 Location: 97900-98992 bp Feature: domain Description: COG31 77 Location: 97900-98992 bp Feature: gene Location: 99175-99945 bp Feature: domain Description: NERD Location: 99274-99607 bp Feature: domain Description: NERD Location: 99274-99607 bp Feature: domain Description: zf-C4_Topoisom Location: 99826-99940 bp Feature: domain Description: zf-C4_Topoisom Location: 99826-99940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378), zf-C4_Topoisom (pfam01396)

Seq: JACFAH010000003.1 (494826 bp)
Overview 1 RT 1: 488083-494510 bp Neighborhood of RT #1 [488083, 494614] restrict_AAA_1 restrict_AAA_1 COG4127 RVT-UG5 nitrilase Feature: gene Location: 488083-489834 bp Feature: domain Description: restrict_AAA_1 Location: 488086-488833 bp Feature: domain Description: restrict_AAA_1 Location: 488086-488833 bp Feature: domain Description: restrict_AAA_1 Location: 489160-489547 bp Feature: domain Description: restrict_AAA_1 Location: 489160-489547 bp Feature: gene Location: 491099-491764 bp Feature: domain Description: COG4127 Location: 491102-491753 bp Feature: domain Description: COG412 7 Location: 491102 -491753 bp Feature: gene Location: 492134-494614 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 492137-492566 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 492 137-492 566 bp Feature: domain Description: nitrilase Location: 493928-494510 bp Feature: domain Description: nitrilase Location: 49392 8-494510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT restrict_AAA_1 (TIGR04435), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), RVT-UG5, nitrilase (cl11424)

Seq: JACFAH010000068.1 (2421 bp)
Overview 1 RT 1: 86-2418 bp Neighborhood of RT #1 [86, 2418] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 86-1804 bp Feature: domain Description: RVT_N Location: 143-380 bp Feature: domain Description: RVT_N Location: 143 -3 80 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 1-1082 bp Feature: domain Description: GIIM Note: maturase Location: 1136-1367 bp Feature: domain Description: GIIM Note: maturase Location: 113 6-13 67 bp Feature: domain Description: HNHc Note: nucleases Location: 1601-1757 bp Feature: domain Description: HNHc Note: nucleases Location: 1601-1757 bp Feature: gene Location: 2074-2202 bp Feature: gene Location: 2233-2418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)