myRT

myRT report for GCA_014695505.1_ASM1469550v1

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Seq: JACJOK010000085.1 (46929 bp)
Overview 1 RT 1: 12487-16343 bp Neighborhood of RT #1 [12487, 16343] COG3415 DDE_3 RVT-AbiA HNHc Feature: gene Location: 12487-13230 bp Feature: domain Description: COG3415 Location: 12577-12955 bp Feature: domain Description: COG341 5 Location: 1 2577-1 2955 bp Feature: domain Description: DDE_3 Location: 13024-13228 bp Feature: domain Description: DDE_3 Location: 1 3024-1 3228 bp Feature: gene Location: 13420-13560 bp Feature: gene Location: 13585-15528 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 14056-14563 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 1 4056-1 4563 bp Feature: gene Location: 15720-16133 bp Feature: domain Description: HNHc Note: nucleases Location: 15741-15900 bp Feature: domain Description: HNHc Note: nucleases Location: 1 5741 -1 5900 bp Feature: gene Location: 16134-16343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), DDE_3 (pfam13358), RVT-AbiA, HNHc (smart00507)

Seq: JACJOK010000020.1 (176382 bp)
Overview 1 RT 1: 134429-138930 bp Neighborhood of RT #1 [134429, 138986] LysR RVT_N RVT-GII GIIM HNH RRXRR Feature: gene Location: 134429-135382 bp Feature: domain Description: LysR Location: 134498-135350 bp Feature: domain Description: LysR Location: 134498-135350 bp Feature: gene Location: 135404-136075 bp Feature: gene Location: 136059-137849 bp Feature: domain Description: RVT_N Location: 136101-136347 bp Feature: domain Description: RVT_N Location: 136101-136347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136389-137082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136389-137082 bp Feature: domain Description: GIIM Note: maturase Location: 137181-137415 bp Feature: domain Description: GIIM Note: maturase Location: 137181-137415 bp Feature: domain Description: HNH Note: nucleases Location: 137640-137775 bp Feature: domain Description: HNH Note: nucleases Location: 137640-137775 bp Feature: gene Location: 137767-138153 bp Feature: gene Location: 138429-138986 bp Feature: domain Description: RRXRR Location: 138438-138930 bp Feature: domain Description: RRXRR Location: 138438-138930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), RRXRR (pfam14239)

Seq: JACJOK010000017.1 (95240 bp)
Overview 1 RT 1: 34954-39533 bp Neighborhood of RT #1 [34954, 39533] vWA_subgroup RVT-Retrons Feature: gene Location: 34954-36792 bp Feature: domain Description: vWA_subgroup Location: 35077-35584 bp Feature: domain Description: vWA_subgroup Location: 3 5077-3 5584 bp Feature: gene Location: 36888-37016 bp Feature: gene Location: 37088-38521 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37664-38282 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 7664-3 8282 bp Feature: gene Location: 38508-38678 bp Feature: gene Location: 39006-39533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT vWA_subgroup (cd01465), RVT-Retrons