myRT

myRT report for GCA_014696015.1_ASM1469601v1

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Seq: JACJPJ010000058.1 (23354 bp)
Overview 1 RT 1: 20437-23167 bp Neighborhood of RT #1 [20437, 23184] Rve IS285 RVT_N RVT-GII GIIM Feature: gene Location: 20437-21147 bp Feature: domain Description: Rve Location: 20467-21079 bp Feature: domain Description: Rve Location: 20467-21 079 bp Feature: gene Location: 21158-21370 bp Feature: domain Description: IS285 Location: 21203-21365 bp Feature: domain Description: IS285 Location: 21 203-21 365 bp Feature: gene Location: 21973-23184 bp Feature: domain Description: RVT_N Location: 22006-22252 bp Feature: domain Description: RVT_N Location: 22006-22252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22294-22927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22294-22927 bp Feature: domain Description: GIIM Note: maturase Location: 23008-23167 bp Feature: domain Description: GIIM Note: maturase Location: 23008-231 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), IS285 (COG3328), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JACJPJ010000089.1 (126516 bp)
Overview 1 RT 1: 122216-125534 bp Neighborhood of RT #1 [122216, 125620] TIGR00266 ksgA RVT_N RVT-GII GIIM HNHc Feature: gene Location: 122216-122878 bp Feature: domain Description: TIGR00266 Location: 122219-122876 bp Feature: domain Description: TIGR002 66 Location: 12 2 2 19-12 2 876 bp Feature: gene Location: 122965-123789 bp Feature: domain Description: ksgA Location: 122974-123775 bp Feature: domain Description: ksgA Location: 12 2 974-12 3775 bp Feature: gene Location: 123938-125620 bp Feature: domain Description: RVT_N Location: 123986-124232 bp Feature: domain Description: RVT_N Location: 12 3986-12 42 32 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124280-124919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 42 80-12 4919 bp Feature: domain Description: GIIM Note: maturase Location: 124997-125228 bp Feature: domain Description: GIIM Note: maturase Location: 12 4997-12 52 2 8 bp Feature: domain Description: HNHc Note: nucleases Location: 125429-125534 bp Feature: domain Description: HNHc Note: nucleases Location: 12 542 9-12 5534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR00266 (TIGR00266 family protein), ksgA (TIGR00755), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJPJ010000019.1 (14658 bp)
Overview 1 RT 1: 1998-6191 bp Neighborhood of RT #1 [1998, 8134] RVT-GII GIIM Peptidases_S8_S53 PGRP Feature: gene Location: 1998-2126 bp Feature: gene Location: 2165-2323 bp Feature: gene Location: 2434-3510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2710-3331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2710-3 3 3 1 bp Feature: domain Description: GIIM Note: maturase Location: 3373-3475 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 73 -3 475 bp Feature: gene Location: 3742-3906 bp Feature: gene Location: 4208-8134 bp Feature: domain Description: Peptidases_S8_S53 Location: 4907-5513 bp Feature: domain Description: Peptidases_S8_S53 Location: 4907-5513 bp Feature: domain Description: PGRP Location: 5996-6191 bp Feature: domain Description: PGRP Location: 5996-6191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Peptidases_S8_S53 (cl10459), PGRP (smart00701)

Seq: JACJPJ010000057.1 (179084 bp)
Overview 1 RT 1: 173760-178188 bp Neighborhood of RT #1 [173760, 178388] RVT-UG7 COG4188 AcrR Feature: gene Location: 173760-173936 bp Feature: gene Location: 174208-174477 bp Feature: gene Location: 174980-176521 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 175358-175781 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 175358-175781 bp Feature: gene Location: 176760-177743 bp Feature: domain Description: COG4188 Location: 176889-177258 bp Feature: domain Description: COG4 188 Location: 176889-177258 bp Feature: gene Location: 177810-178388 bp Feature: domain Description: AcrR Location: 177855-178188 bp Feature: domain Description: AcrR Location: 177855-178188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, COG4188 (Predicted dienelactone hydrolase ), AcrR (COG1309)