myRT

myRT report for GCA_014696775.1_ASM1469677v1

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Seq: JACJQR010000001.1 (723181 bp)
Overview 1 RT 1: 229080-231704 bp Neighborhood of RT #1 [229080, 231704] COG4634 RVT-Retrons HTH_XRE Feature: gene Location: 229080-229412 bp Feature: domain Description: COG4634 Location: 229083-229407 bp Feature: domain Description: COG4634 Location: 229083-229407 bp Feature: gene Location: 229493-230239 bp Feature: gene Location: 230276-231136 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 230387-230924 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 230387-230924 bp Feature: gene Location: 231177-231464 bp Feature: domain Description: HTH_XRE Location: 231198-231330 bp Feature: domain Description: HTH_XRE Location: 231 1 98-231 330 bp Feature: gene Location: 231543-231704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4634 (Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component ), RVT-Retrons, HTH_XRE (smart00530)

Seq: JACJQR010000035.1 (51588 bp)
Overview 1 RT 1: 34482-37588 bp Neighborhood of RT #1 [34482, 37608] RVT-DGRs Avd_like YfmG Feature: gene Location: 34482-34685 bp Feature: gene Location: 34773-34916 bp Feature: gene Location: 35139-36197 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35346-35991 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35346-35991 bp Feature: gene Location: 36215-36559 bp Feature: domain Description: Avd_like Location: 36233-36539 bp Feature: domain Description: Avd_like Location: 362 33-36539 bp Feature: gene Location: 36769-37608 bp Feature: domain Description: YfmG Location: 36826-37588 bp Feature: domain Description: YfmG Location: 3682 6-37588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), YfmG (COG1262)

Seq: JACJQR010000011.1 (205796 bp)
Overview 1 RT 1: 166654-172605 bp Neighborhood of RT #1 [166654, 172610] COG4249 YfmG RVT-DGRs DUF3598 hisS Feature: gene Location: 166654-168606 bp Feature: domain Description: COG4249 Location: 166657-167362 bp Feature: domain Description: COG4249 Location: 166657-1673 62 bp Feature: domain Description: YfmG Location: 167587-168586 bp Feature: domain Description: YfmG Location: 167587-168586 bp Feature: gene Location: 169099-169287 bp Feature: gene Location: 169423-170319 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 169462-170104 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 169462-170104 bp Feature: gene Location: 170654-171097 bp Feature: domain Description: DUF3598 Location: 170684-171089 bp Feature: domain Description: DUF3 598 Location: 170684-171089 bp Feature: gene Location: 171222-172610 bp Feature: domain Description: hisS Location: 171243-172605 bp Feature: domain Description: hisS Location: 171243 -172605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4249 (Uncharacterized protein, contains caspase domain ), YfmG (COG1262), RVT-DGRs, DUF3598 (pfam12204), hisS (TIGR00442)

Seq: JACJQR010000043.1 (38874 bp)
Overview 1 RT 1: 11906-16625 bp Neighborhood of RT #1 [11906, 16774] BcsQ RVT_N RVT-GII GIIM McrA DDE_Tnp_1_3 Feature: gene Location: 11906-12649 bp Feature: domain Description: BcsQ Location: 11909-12641 bp Feature: domain Description: BcsQ Location: 11909-1264 1 bp Feature: gene Location: 12855-13100 bp Feature: gene Location: 13165-14967 bp Feature: domain Description: RVT_N Location: 13237-13480 bp Feature: domain Description: RVT_N Location: 13237-134 80 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13525-14218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13525-14 218 bp Feature: domain Description: GIIM Note: maturase Location: 14320-14551 bp Feature: domain Description: GIIM Note: maturase Location: 14 320-14 551 bp Feature: domain Description: McrA Location: 14596-14941 bp Feature: domain Description: McrA Location: 14 596-14 94 1 bp Feature: gene Location: 15126-15281 bp Feature: gene Location: 16076-16774 bp Feature: domain Description: DDE_Tnp_1_3 Location: 16208-16625 bp Feature: domain Description: DDE_Tnp_1_3 Location: 16208-16625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BcsQ (COG1192), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), DDE_Tnp_1_3 (pfam13612)

Seq: JACJQR010000003.1 (404944 bp)
Overview 1 RT 1: 297457-303831 bp Neighborhood of RT #1 [297457, 303831] HTH_XRE DUF4384 RVT-CRISPR cas1 Feature: gene Location: 297457-297606 bp Feature: gene Location: 297930-298673 bp Feature: domain Description: HTH_XRE Location: 297978-298125 bp Feature: domain Description: HTH_XRE Location: 297978-298125 bp Feature: domain Description: DUF4384 Location: 298299-298530 bp Feature: domain Description: DUF4384 Location: 298299-2985 30 bp Feature: gene Location: 299171-301177 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 299357-299966 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 29935 7-299966 bp Feature: domain Description: cas1 Location: 300182-301151 bp Feature: domain Description: cas1 Location: 300182-30115 1 bp Feature: gene Location: 302061-302267 bp Feature: gene Location: 303010-303831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), DUF4384 (pfam14326), RVT-CRISPR, cas1 (TIGR00287)

Seq: JACJQR010000048.1 (24126 bp)
Overview 1 RT 1: 18391-23799 bp Neighborhood of RT #1 [18391, 23799] CHAT CHASE2 DUF928 RVT-GII McrA Feature: gene Location: 18391-20736 bp Feature: domain Description: CHAT Location: 19003-19390 bp Feature: domain Description: CHAT Location: 19003-19390 bp Feature: domain Description: CHASE2 Location: 19519-20722 bp Feature: domain Description: CHASE2 Location: 19519-20722 bp Feature: gene Location: 20841-21605 bp Feature: domain Description: DUF928 Location: 20994-21594 bp Feature: domain Description: DUF928 Location: 20994-21594 bp Feature: gene Location: 21880-22815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21952-22231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21952-22231 bp Feature: domain Description: McrA Location: 22462-22786 bp Feature: domain Description: McrA Location: 2246 2-22786 bp Feature: gene Location: 23548-23799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHAT (pfam12770), CHASE2 (smart01080), DUF928 (pfam06051), RVT-GII, McrA (COG4058)

Seq: JACJQR010000006.1 (269153 bp)
Overview 1 RT 1: 215025-220660 bp Neighborhood of RT #1 [215025, 220660] InsQ RVT_N RVT-GII McrA Feature: gene Location: 215025-215543 bp Feature: gene Location: 215755-216996 bp Feature: domain Description: InsQ Location: 215758-216868 bp Feature: domain Description: InsQ Location: 2157 58-216868 bp Feature: gene Location: 217636-219213 bp Feature: domain Description: RVT_N Location: 217669-217912 bp Feature: domain Description: RVT_N Location: 217 669-217 912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217966-218620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217 966-218620 bp Feature: domain Description: McrA Location: 218851-219190 bp Feature: domain Description: McrA Location: 218851-219190 bp Feature: gene Location: 219316-220014 bp Feature: gene Location: 220241-220660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, McrA (COG4058)