myRT

myRT report for GCA_014696905.1_ASM1469690v1

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Seq: JACJQW010000049.1 (41571 bp)
Overview 1 RT 1: 32143-35751 bp Neighborhood of RT #1 [32143, 35751] Pentapeptide Pentapeptide Pentapeptide Pentapeptide Pentapeptide Pentapeptide RVT-GII HNH Feature: gene Location: 32143-34047 bp Feature: domain Description: Pentapeptide Location: 32863-32974 bp Feature: domain Description: Pentapeptide Location: 32863-32974 bp Feature: domain Description: Pentapeptide Location: 33037-33151 bp Feature: domain Description: Pentapeptide Location: 33037-331 51 bp Feature: domain Description: Pentapeptide Location: 33274-33388 bp Feature: domain Description: Pentapeptide Location: 33274-33388 bp Feature: domain Description: Pentapeptide Location: 33424-33538 bp Feature: domain Description: Pentapeptide Location: 33424-33538 bp Feature: domain Description: Pentapeptide Location: 33607-33721 bp Feature: domain Description: Pentapeptide Location: 33607-33721 bp Feature: domain Description: Pentapeptide Location: 33814-33916 bp Feature: domain Description: Pentapeptide Location: 3381 4-3391 6 bp Feature: gene Location: 34216-34500 bp Feature: gene Location: 34534-34848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34561-34828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34561 -34828 bp Feature: gene Location: 34854-35048 bp Feature: domain Description: HNH Note: nucleases Location: 34887-34971 bp Feature: domain Description: HNH Note: nucleases Location: 34887-34971 bp Feature: gene Location: 35314-35751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pentapeptide (pfam00805), RVT-GII, HNH (pfam01844)

Seq: JACJQW010000044.1 (54900 bp)
Overview 1 RT 1: 29648-39238 bp Neighborhood of RT #1 [29648, 39258] Cas_Cas1 RVT-CRISPR cas1 HTH_XRE DUF4384 TPR_12 TPR_12 TPR_10 TPR_12 TPR_12 TPR_12 TPR_12 CHAT Feature: gene Location: 29648-30688 bp Feature: domain Description: Cas_Cas1 Location: 29660-30401 bp Feature: domain Description: Cas_Cas1 Location: 2 9660-30401 bp Feature: gene Location: 31809-31940 bp Feature: gene Location: 32491-34503 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 32680-33286 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 32 680-332 86 bp Feature: domain Description: cas1 Location: 33508-34474 bp Feature: domain Description: cas1 Location: 33508-34474 bp Feature: gene Location: 34733-35494 bp Feature: domain Description: HTH_XRE Location: 34778-34937 bp Feature: domain Description: HTH_XRE Location: 34778-34937 bp Feature: domain Description: DUF4384 Location: 35123-35354 bp Feature: domain Description: DUF4384 Location: 3512 3-35354 bp Feature: gene Location: 35509-39258 bp Feature: domain Description: TPR_12 Location: 35662-35875 bp Feature: domain Description: TPR_12 Location: 35662 -35875 bp Feature: domain Description: TPR_12 Location: 35911-36133 bp Feature: domain Description: TPR_12 Location: 35911-36133 bp Feature: domain Description: TPR_10 Location: 36166-36283 bp Feature: domain Description: TPR_10 Location: 36166-362 83 bp Feature: domain Description: TPR_12 Location: 36286-36511 bp Feature: domain Description: TPR_12 Location: 362 86-36511 bp Feature: domain Description: TPR_12 Location: 36538-36763 bp Feature: domain Description: TPR_12 Location: 36538-36763 bp Feature: domain Description: TPR_12 Location: 36793-37015 bp Feature: domain Description: TPR_12 Location: 36793-37015 bp Feature: domain Description: TPR_12 Location: 37045-37267 bp Feature: domain Description: TPR_12 Location: 37045-372 67 bp Feature: domain Description: CHAT Location: 38134-39238 bp Feature: domain Description: CHAT Location: 38134-392 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cas1 (pfam01867), RVT-CRISPR, cas1 (TIGR00287), HTH_XRE (smart00530), DUF4384 (pfam14326), TPR_12 (pfam13424), TPR_10 (pfam13374), CHAT (pfam12770)

Seq: JACJQW010000069.1 (20927 bp)
Overview 1 RT 1: 14019-19530 bp Neighborhood of RT #1 [14019, 20255] RVT_N RVT_N RVT-GII YkfC HNHc RVT-GII McrA UvrC Feature: gene Location: 14019-14306 bp Feature: gene Location: 14541-14762 bp Feature: domain Description: RVT_N Location: 14577-14760 bp Feature: domain Description: RVT_N Location: 14577-14760 bp Feature: gene Location: 15356-17044 bp Feature: domain Description: RVT_N Location: 15416-15659 bp Feature: domain Description: RVT_N Location: 15416-15659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15701-16355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15701-163 55 bp Feature: domain Description: YkfC Location: 16490-16655 bp Feature: domain Description: YkfC Location: 16490-16655 bp Feature: domain Description: HNHc Note: nucleases Location: 16862-17024 bp Feature: domain Description: HNHc Note: nucleases Location: 16862-17024 bp Feature: gene Location: 17424-18521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17448-17901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17448-17901 bp Feature: domain Description: McrA Location: 18132-18474 bp Feature: domain Description: McrA Location: 1813 2-18474 bp Feature: gene Location: 18714-19172 bp Feature: gene Location: 19365-20255 bp Feature: domain Description: UvrC Location: 19416-19530 bp Feature: domain Description: UvrC Location: 19416-1953 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), McrA (COG4058), UvrC (COG0322)

Seq: JACJQW010000001.1 (681897 bp)
Overview 1 RT 1: 133979-142774 bp Neighborhood of RT #1 [133979, 142947] RVT-Retrons DUF3854 Lactamase_B_3 Feature: gene Location: 133979-134191 bp Feature: gene Location: 134351-135295 bp Feature: gene Location: 136291-137343 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 136474-137086 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1364 74 -137086 bp Feature: gene Location: 138887-141991 bp Feature: domain Description: DUF3854 Location: 139343-139715 bp Feature: domain Description: DUF3854 Location: 13934 3-139715 bp Feature: gene Location: 142171-142947 bp Feature: domain Description: Lactamase_B_3 Location: 142177-142774 bp Feature: domain Description: Lactamase_B_3 Location: 14 2177-14 2774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF3854 (pfam12965), Lactamase_B_3 (pfam13483)

Seq: JACJQW010000006.1 (256455 bp)
Overview 1 RT 1: 41839-47253 bp Neighborhood of RT #1 [41839, 47330] RVT-CRISPR cas1 PhdYeFM_antitox Feature: gene Location: 41839-42018 bp Feature: gene Location: 42018-42296 bp Feature: gene Location: 42577-44595 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 42763-43372 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 42763-43372 bp Feature: domain Description: cas1 Location: 43588-44566 bp Feature: domain Description: cas1 Location: 435 88-445 66 bp Feature: gene Location: 45834-46082 bp Feature: gene Location: 47106-47330 bp Feature: domain Description: PhdYeFM_antitox Location: 47109-47253 bp Feature: domain Description: PhdYeFM_antitox Location: 47109-4725 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, cas1 (TIGR00287), PhdYeFM_antitox (pfam02604)

Seq: JACJQW010000050.1 (40440 bp)
Overview 1 RT 1: 6149-11361 bp Neighborhood of RT #1 [6149, 11378] RVT-DGRs Avd_like YfmG Feature: gene Location: 6149-6289 bp Feature: gene Location: 6415-6714 bp Feature: gene Location: 6823-7890 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7033-7672 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7033-76 72 bp Feature: gene Location: 8095-8436 bp Feature: domain Description: Avd_like Location: 8113-8425 bp Feature: domain Description: Avd_like Location: 8113-8425 bp Feature: gene Location: 8652-11378 bp Feature: domain Description: YfmG Location: 10521-11361 bp Feature: domain Description: YfmG Location: 10521-1136 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), YfmG (COG1262)