myRT

myRT report for GCA_014696925.1_ASM1469692v1

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Seq: JACJQY010000007.1 (158456 bp)
Overview 1 RT 1: 8865-13246 bp 2 RT 2: 22869-31227 bp Neighborhood of RT #1 [8865, 13311] PRTRC_ThiF RVT_N RVT-GII McrA PRTRC_A Neighborhood of RT #2 [22869, 31331] RVT_N RVT-GII McrA COG4646 COG4646 YtxK Feature: gene Location: 8865-9536 bp Feature: gene Location: 9610-10119 bp Feature: domain Description: PRTRC_ThiF Location: 9631-10033 bp Feature: domain Description: PRTRC_ThiF Location: 9631 -1 0033 bp Feature: gene Location: 10371-11915 bp Feature: domain Description: RVT_N Location: 10407-10653 bp Feature: domain Description: RVT_N Location: 1 0407-1 0653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10704-11331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0704-1 1 331 bp Feature: domain Description: McrA Location: 11565-11886 bp Feature: domain Description: McrA Location: 1 1 565-1 1 886 bp Feature: gene Location: 12261-12491 bp Feature: gene Location: 12622-13311 bp Feature: domain Description: PRTRC_A Location: 12763-13246 bp Feature: domain Description: PRTRC_A Location: 1 2763-1 3246 bp Feature: gene Location: 22869-23339 bp Feature: gene Location: 23469-23705 bp Feature: gene Location: 23908-25452 bp Feature: domain Description: RVT_N Location: 23944-24190 bp Feature: domain Description: RVT_N Location: 23944-241 90 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24241-24868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24241 -24868 bp Feature: domain Description: McrA Location: 25102-25423 bp Feature: domain Description: McrA Location: 251 02-25423 bp Feature: gene Location: 25984-30210 bp Feature: domain Description: COG4646 Location: 26431-26806 bp Feature: domain Description: COG4646 Location: 26431 -26806 bp Feature: domain Description: COG4646 Location: 27001-28627 bp Feature: domain Description: COG4646 Location: 27001 -28627 bp Feature: gene Location: 30300-31331 bp Feature: domain Description: YtxK Location: 30825-31227 bp Feature: domain Description: YtxK Location: 30825-31 227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRTRC_ThiF (TIGR03736), RVT_N (pfam13655), RVT-GII, McrA (COG4058), PRTRC_A (TIGR03735), COG4646 (Adenine-specific DNA methylase, N12 class ), YtxK (COG0827)

Seq: JACJQY010000023.1 (79112 bp)
Overview 1 RT 1: 68336-72828 bp Neighborhood of RT #1 [68336, 72828] PIN_VapC4-5_FitB-like RVT-UG10 DEDDh Feature: gene Location: 68336-68758 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 68345-68747 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 68345-68747 bp Feature: gene Location: 68965-69903 bp Feature: gene Location: 69900-71645 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 70152-70686 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 70152 -70686 bp Feature: gene Location: 71672-72382 bp Feature: domain Description: DEDDh Location: 71684-72149 bp Feature: domain Description: DEDDh Location: 71684-72 149 bp Feature: gene Location: 72421-72828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_VapC4-5_FitB-like (cd18754), RVT-UG10, DEDDh (cd06127)

Seq: JACJQY010000052.1 (36095 bp)
Overview 1 RT 1: 20216-25533 bp Neighborhood of RT #1 [20216, 25571] YfmG RVT-DGRs Avd_like YfmG Feature: gene Location: 20216-21052 bp Feature: domain Description: YfmG Location: 20252-21011 bp Feature: domain Description: YfmG Location: 20252-21011 bp Feature: gene Location: 21097-21270 bp Feature: gene Location: 21382-22458 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21589-22231 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21589-2223 1 bp Feature: gene Location: 22455-22805 bp Feature: domain Description: Avd_like Location: 22473-22779 bp Feature: domain Description: Avd_like Location: 22473 -22779 bp Feature: gene Location: 22914-25571 bp Feature: domain Description: YfmG Location: 24807-25533 bp Feature: domain Description: YfmG Location: 24807-2553 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: JACJQY010000057.1 (31011 bp)
Overview 1 RT 1: 14599-17162 bp Neighborhood of RT #1 [14599, 17162] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR Feature: gene Location: 14599-14874 bp Feature: domain Description: Cas2_I_II_III Location: 14608-14836 bp Feature: domain Description: Cas2_I_II_III Location: 14 608-14 836 bp Feature: gene Location: 14875-15711 bp Feature: domain Description: Cas1_I-II-III Location: 14881-15676 bp Feature: domain Description: Cas1_I-II-III Location: 14 881-15676 bp Feature: gene Location: 15832-16311 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 16147-16261 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1614 7-16261 bp Feature: gene Location: 16648-16815 bp Feature: gene Location: 17031-17162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR