myRT

myRT report for GCA_014697355.1_ASM1469735v1

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Seq: JACJRQ010000069.1 (30983 bp)
Overview 1 RT 1: 5140-11653 bp Neighborhood of RT #1 [5140, 11653] RVT_N RVT-GII GIIM HNH Feature: gene Location: 5140-5550 bp Feature: gene Location: 5550-6227 bp Feature: gene Location: 6806-8626 bp Feature: domain Description: RVT_N Location: 6845-7091 bp Feature: domain Description: RVT_N Location: 6845-7091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7133-7829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 33-7829 bp Feature: domain Description: GIIM Note: maturase Location: 7934-8162 bp Feature: domain Description: GIIM Note: maturase Location: 7934-81 62 bp Feature: domain Description: HNH Note: nucleases Location: 8387-8522 bp Feature: domain Description: HNH Note: nucleases Location: 8387-8522 bp Feature: gene Location: 8851-10752 bp Feature: gene Location: 10898-11653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JACJRQ010000083.1 (11469 bp)
Overview 1 RT 1: 126-6031 bp Neighborhood of RT #1 [126, 6057] AroE RVT-UG19 NERD UvrD HelD Aes Feature: gene Location: 126-1004 bp Feature: domain Description: AroE Location: 141-993 bp Feature: domain Description: AroE Location: 141-993 bp Feature: gene Location: 1200-2978 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 1644-2148 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 1644-2 148 bp Feature: gene Location: 2989-4557 bp Feature: domain Description: NERD Location: 3037-3379 bp Feature: domain Description: NERD Location: 3037-3379 bp Feature: domain Description: UvrD Location: 3625-3754 bp Feature: domain Description: UvrD Location: 362 5-3754 bp Feature: domain Description: HelD Location: 3862-4528 bp Feature: domain Description: HelD Location: 3862 -452 8 bp Feature: gene Location: 4828-6057 bp Feature: domain Description: Aes Location: 5263-6031 bp Feature: domain Description: Aes Location: 52 63-6031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AroE (COG0169), RVT-UG19, NERD (pfam08378), UvrD (COG0210), HelD (COG3973), Aes (COG0657)

Seq: JACJRQ010000001.1 (712123 bp)
Overview 1 RT 1: 50534-56149 bp 2 RT 2: 111484-117213 bp Neighborhood of RT #1 [50534, 56149] clpC RVT-Retrons Neighborhood of RT #2 [111484, 117230] Pentapeptide_3 Pentapeptide_3 Pentapeptide_3 Pentapeptide_3 HHH_3 MDR6 RVT_N RVT-GII GIIM HNH MDR6 Feature: gene Location: 50534-53002 bp Feature: domain Description: clpC Location: 50537-52952 bp Feature: domain Description: clpC Location: 5053 7-52952 bp Feature: gene Location: 53103-53978 bp Feature: gene Location: 54003-55073 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54177-54783 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54177-54783 bp Feature: gene Location: 55594-55932 bp Feature: gene Location: 55964-56149 bp Feature: gene Location: 111484-113721 bp Feature: domain Description: Pentapeptide_3 Location: 112051-112171 bp Feature: domain Description: Pentapeptide_3 Location: 112051-112171 bp Feature: domain Description: Pentapeptide_3 Location: 112180-112312 bp Feature: domain Description: Pentapeptide_3 Location: 112180-1123 12 bp Feature: domain Description: Pentapeptide_3 Location: 112372-112459 bp Feature: domain Description: Pentapeptide_3 Location: 1123 72-112459 bp Feature: domain Description: Pentapeptide_3 Location: 112471-112600 bp Feature: domain Description: Pentapeptide_3 Location: 112471-112600 bp Feature: domain Description: HHH_3 Location: 112831-112996 bp Feature: domain Description: HHH_3 Location: 11283 1-112996 bp Feature: gene Location: 113731-114177 bp Feature: domain Description: MDR6 Location: 113803-114160 bp Feature: domain Description: MDR6 Location: 113 803 -114160 bp Feature: gene Location: 114184-115959 bp Feature: domain Description: RVT_N Location: 114223-114469 bp Feature: domain Description: RVT_N Location: 114223 -114469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114511-115198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114511-115198 bp Feature: domain Description: GIIM Note: maturase Location: 115282-115510 bp Feature: domain Description: GIIM Note: maturase Location: 115282-115510 bp Feature: domain Description: HNH Note: nucleases Location: 115735-115870 bp Feature: domain Description: HNH Note: nucleases Location: 11573 5-115870 bp Feature: gene Location: 116134-116397 bp Feature: gene Location: 116550-117230 bp Feature: domain Description: MDR6 Location: 116553-117213 bp Feature: domain Description: MDR6 Location: 116553 -117213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpC, RVT-Retrons, Pentapeptide_3 (pfam13576), HHH_3 (pfam12836), MDR6 (cd08272), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JACJRQ010000063.1 (38122 bp)
Overview 1 RT 1: 413-3318 bp Neighborhood of RT #1 [413, 4349] RVT_N RVT-GII GIIM McrA Relaxase Feature: gene Location: 413-2173 bp Feature: domain Description: RVT_N Location: 458-704 bp Feature: domain Description: RVT_N Location: 4 58-704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 746-1430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 6-14 30 bp Feature: domain Description: GIIM Note: maturase Location: 1541-1757 bp Feature: domain Description: GIIM Note: maturase Location: 154 1-1757 bp Feature: domain Description: McrA Location: 1859-2126 bp Feature: domain Description: McrA Location: 1859-2126 bp Feature: gene Location: 2338-2544 bp Feature: gene Location: 2553-4349 bp Feature: domain Description: Relaxase Location: 2586-3318 bp Feature: domain Description: Relaxase Location: 2586-3318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Relaxase (pfam03432)

Seq: JACJRQ010000030.1 (103245 bp)
Overview 1 RT 1: 67585-72696 bp Neighborhood of RT #1 [67585, 72719] RTPR RVT_N RVT-GII GIIM McrA RNR_II_monomer RTPR Feature: gene Location: 67585-67974 bp Feature: domain Description: RTPR Location: 67609-67957 bp Feature: domain Description: RTPR Location: 67609-6795 7 bp Feature: gene Location: 68216-68359 bp Feature: gene Location: 68610-70439 bp Feature: domain Description: RVT_N Location: 68652-68898 bp Feature: domain Description: RVT_N Location: 6865 2-68898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68940-69624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68940-69624 bp Feature: domain Description: GIIM Note: maturase Location: 69726-69960 bp Feature: domain Description: GIIM Note: maturase Location: 69726-69960 bp Feature: domain Description: McrA Location: 70056-70329 bp Feature: domain Description: McrA Location: 7005 6-70329 bp Feature: gene Location: 70458-71306 bp Feature: domain Description: RNR_II_monomer Location: 70467-71301 bp Feature: domain Description: RNR_II_monomer Location: 70467-71301 bp Feature: gene Location: 71676-72719 bp Feature: domain Description: RTPR Location: 71682-72696 bp Feature: domain Description: RTPR Location: 71682-72696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RTPR (TIGR02505), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), RNR_II_monomer (cd01676)