myRT

myRT report for GCA_014697495.1_ASM1469749v1

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Seq: JACJRX010000002.1 (355914 bp)
Overview 1 RT 1: 342437-346523 bp Neighborhood of RT #1 [342437, 346523] RVT-CRISPR cas1 Feature: gene Location: 342437-342601 bp Feature: gene Location: 342598-342780 bp Feature: gene Location: 343764-345785 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 343950-344559 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 343950-344559 bp Feature: domain Description: cas1 Location: 344775-345756 bp Feature: domain Description: cas1 Location: 344775-345756 bp Feature: gene Location: 346066-346344 bp Feature: gene Location: 346344-346523 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, cas1 (TIGR00287)

Seq: JACJRX010000016.1 (161518 bp)
Overview 1 RT 1: 33809-37298 bp Neighborhood of RT #1 [33809, 37372] RVT-Retrons DUF3349 Feature: gene Location: 33809-34372 bp Feature: gene Location: 34369-34569 bp Feature: gene Location: 34918-35985 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35092-35698 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35092 -35698 bp Feature: gene Location: 36023-36901 bp Feature: gene Location: 37079-37372 bp Feature: domain Description: DUF3349 Location: 37106-37298 bp Feature: domain Description: DUF3349 Location: 37106-372 98 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF3349 (pfam11829)

Seq: JACJRX010000001.1 (684221 bp)
Overview 1 RT 1: 661208-669795 bp Neighborhood of RT #1 [661208, 669795] Lactamase_B_3 DUF3854 RVT-Retrons Feature: gene Location: 661208-661984 bp Feature: domain Description: Lactamase_B_3 Location: 661214-661811 bp Feature: domain Description: Lactamase_B_3 Location: 661214-661811 bp Feature: gene Location: 662161-665265 bp Feature: domain Description: DUF3854 Location: 662617-662989 bp Feature: domain Description: DUF3 854 Location: 662617-662989 bp Feature: gene Location: 666802-667854 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 666985-667597 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 666985-667597 bp Feature: gene Location: 668121-668381 bp Feature: gene Location: 668851-669795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lactamase_B_3 (pfam13483), DUF3854 (pfam12965), RVT-Retrons

Seq: JACJRX010000061.1 (35802 bp)
Overview 1 RT 1: 1547-6926 bp Neighborhood of RT #1 [1547, 6937] HTH_23 RVT_N RVT-GII GIIM HNH HK_WalK HK_WalK OmpR Feature: gene Location: 1547-1810 bp Feature: domain Description: HTH_23 Location: 1640-1718 bp Feature: domain Description: HTH_23 Location: 164 0-1718 bp Feature: gene Location: 1883-2041 bp Feature: gene Location: 2479-4389 bp Feature: domain Description: RVT_N Location: 2596-2842 bp Feature: domain Description: RVT_N Location: 2596-284 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2884-3580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2884 -3580 bp Feature: domain Description: GIIM Note: maturase Location: 3685-3916 bp Feature: domain Description: GIIM Note: maturase Location: 3685-3916 bp Feature: domain Description: HNH Note: nucleases Location: 4141-4276 bp Feature: domain Description: HNH Note: nucleases Location: 4 14 1-4 276 bp Feature: gene Location: 5136-6515 bp Feature: domain Description: HK_WalK Location: 5151-5829 bp Feature: domain Description: HK_WalK Location: 5151-5829 bp Feature: domain Description: HK_WalK Location: 5835-6501 bp Feature: domain Description: HK_WalK Location: 5835-6501 bp Feature: gene Location: 6560-6937 bp Feature: domain Description: OmpR Location: 6569-6926 bp Feature: domain Description: OmpR Location: 6569-6926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), HK_WalK (NF033092), OmpR (COG0745)

Seq: JACJRX010000065.1 (34054 bp)
Overview 1 RT 1: 2908-6528 bp 2 RT 2: 25993-32007 bp Neighborhood of RT #1 [2908, 6548] HTH_XRE RVT-DGRs Avd_like YfmG Neighborhood of RT #2 [25993, 32009] PRK13922 PRK13927 RVT_N RVT-GII GIIM HNHc PRK07459 YggE Feature: gene Location: 2908-3168 bp Feature: gene Location: 3238-3564 bp Feature: domain Description: HTH_XRE Location: 3334-3469 bp Feature: domain Description: HTH_XRE Location: 3334-3469 bp Feature: gene Location: 4176-5234 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4386-5028 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4386-5 028 bp Feature: gene Location: 5255-5599 bp Feature: domain Description: Avd_like Location: 5273-5579 bp Feature: domain Description: Avd_like Location: 5 273-5 5 79 bp Feature: gene Location: 5682-6548 bp Feature: domain Description: YfmG Location: 5718-6528 bp Feature: domain Description: YfmG Location: 5 718-65 28 bp Feature: gene Location: 25993-26814 bp Feature: domain Description: PRK13922 Location: 26041-26749 bp Feature: domain Description: PRK13922 Location: 26041-26749 bp Feature: gene Location: 26908-27915 bp Feature: domain Description: PRK13927 Location: 26911-27889 bp Feature: domain Description: PRK13927 Location: 26911-27889 bp Feature: gene Location: 29128-30819 bp Feature: domain Description: RVT_N Location: 29161-29407 bp Feature: domain Description: RVT_N Location: 29161-29407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29449-30115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29449-30115 bp Feature: domain Description: GIIM Note: maturase Location: 30217-30427 bp Feature: domain Description: GIIM Note: maturase Location: 30217-30427 bp Feature: domain Description: HNHc Note: nucleases Location: 30649-30796 bp Feature: domain Description: HNHc Note: nucleases Location: 30649-30796 bp Feature: gene Location: 30985-31203 bp Feature: domain Description: PRK07459 Location: 30988-31189 bp Feature: domain Description: PRK0745 9 Location: 30988-31189 bp Feature: gene Location: 31266-32009 bp Feature: domain Description: YggE Location: 31329-32007 bp Feature: domain Description: YggE Location: 31329-32007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-DGRs, Avd_like (cd16376), YfmG (COG1262), PRK13922 (rod shape-determining protein MreC; Provisional), PRK13927 (rod shape-determining protein MreB; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)
PRK07459 (single-stranded DNA-binding protein; Provisional), YggE (COG2968)