myRT

myRT report for GCA_014698035.1_ASM1469803v1

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Seq: JACJSF010000100.1 (27442 bp)
Overview 1 RT 1: 25449-27342 bp Neighborhood of RT #1 [25449, 27356] SMI1_KNR4 RVT_N RVT-GII Feature: gene Location: 25449-26108 bp Feature: domain Description: SMI1_KNR4 Location: 25563-25923 bp Feature: domain Description: SMI1 _KNR4 Location: 25563-25923 bp Feature: gene Location: 26430-26657 bp Feature: gene Location: 26769-27356 bp Feature: domain Description: RVT_N Location: 26805-27045 bp Feature: domain Description: RVT_N Location: 26805-27045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27102-27342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 02-27342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: JACJSF010000002.1 (240300 bp)
Overview 1 RT 1: 47042-52118 bp Neighborhood of RT #1 [47042, 52165] COP23 RVT-Retrons SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 Feature: gene Location: 47042-47299 bp Feature: gene Location: 47432-47926 bp Feature: domain Description: COP23 Location: 47537-47897 bp Feature: domain Description: COP2 3 Location: 47537-47897 bp Feature: gene Location: 48616-49710 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48850-49459 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48850-49459 bp Feature: gene Location: 50081-50275 bp Feature: gene Location: 50627-52165 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 50660-50810 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 50660-50810 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 51059-51167 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 51059-51167 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 51479-52118 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 51479-52 118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: JACJSF010000044.1 (60994 bp)
Overview 1 RT 1: 43671-52599 bp Neighborhood of RT #1 [43671, 52599] GT4_sucrose_synthase YfmG Avd_like RVT-DGRs Feature: gene Location: 43671-47519 bp Feature: domain Description: GT4_sucrose_synthase Location: 45483-46668 bp Feature: domain Description: GT4_sucrose_synthase Location: 45483 -46668 bp Feature: domain Description: YfmG Location: 46722-47502 bp Feature: domain Description: YfmG Location: 46722-47502 bp Feature: gene Location: 47654-47968 bp Feature: domain Description: Avd_like Location: 47672-47966 bp Feature: domain Description: Avd_like Location: 47672-47966 bp Feature: gene Location: 48020-49078 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 48230-48869 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4823 0-48869 bp Feature: gene Location: 49711-50880 bp Feature: gene Location: 50986-52599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: JACJSF010000089.1 (32173 bp)
Overview 1 RT 1: 27890-32021 bp Neighborhood of RT #1 [27890, 32041] TIR_2 YgdH YgdH UPF0061 RVT-GII McrA Feature: gene Location: 27890-29167 bp Feature: domain Description: TIR_2 Location: 27986-28361 bp Feature: domain Description: TIR_2 Location: 27986-28361 bp Feature: domain Description: YgdH Location: 28538-28712 bp Feature: domain Description: YgdH Location: 28538-28712 bp Feature: domain Description: YgdH Location: 28853-29105 bp Feature: domain Description: YgdH Location: 28853-29105 bp Feature: gene Location: 29494-30951 bp Feature: domain Description: UPF0061 Location: 29542-30937 bp Feature: domain Description: UPF0061 Location: 2954 2-30937 bp Feature: gene Location: 31058-32041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31088-31457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31088-314 57 bp Feature: domain Description: McrA Location: 31691-32021 bp Feature: domain Description: McrA Location: 31691-32021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: JACJSF010000086.1 (33932 bp)
Overview 1 RT 1: 39-2384 bp Neighborhood of RT #1 [39, 2384] RVT_N RVT-GII Feature: gene Location: 39-902 bp Feature: domain Description: RVT_N Location: 351-591 bp Feature: domain Description: RVT_N Location: 35 1-5 91 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 648-888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 648-888 bp Feature: gene Location: 1322-1456 bp Feature: gene Location: 1464-2384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: JACJSF010000181.1 (6416 bp)
Overview 1 RT 1: 133-2587 bp Neighborhood of RT #1 [133, 2724] RVT-GII McrA TPR TPR_11 TPR Feature: gene Location: 133-1080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166-496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 6 -496 bp Feature: domain Description: McrA Location: 733-1060 bp Feature: domain Description: McrA Location: 733-106 0 bp Feature: gene Location: 1239-1910 bp Feature: gene Location: 1960-2724 bp Feature: domain Description: TPR Location: 1990-2221 bp Feature: domain Description: TPR Location: 1990-2221 bp Feature: domain Description: TPR_11 Location: 2260-2338 bp Feature: domain Description: TPR_11 Location: 226 0-2338 bp Feature: domain Description: TPR Location: 2347-2587 bp Feature: domain Description: TPR Location: 2347-2587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: JACJSF010000003.1 (230008 bp)
Overview 1 RT 1: 130296-135744 bp Neighborhood of RT #1 [130296, 135752] cysS YejR RVT-GII TM_helix TM_helix TM_helix TM_helix TM_helix Polyketide_cyc2 Feature: gene Location: 130296-131900 bp Feature: domain Description: cysS Location: 130368-131895 bp Feature: domain Description: cysS Location: 130368-131895 bp Feature: gene Location: 131969-133084 bp Feature: domain Description: YejR Location: 132026-133043 bp Feature: domain Description: YejR Location: 132026-133043 bp Feature: gene Location: 133190-133405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133271-133394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13327 1-133394 bp Feature: gene Location: 133464-135116 bp Feature: domain Description: TM_helix Location: 133596-133734 bp Feature: domain Description: TM_helix Location: 133596-1337 34 bp Feature: domain Description: TM_helix Location: 133875-134016 bp Feature: domain Description: TM_helix Location: 13387 5-134016 bp Feature: domain Description: TM_helix Location: 134163-134304 bp Feature: domain Description: TM_helix Location: 134163-134304 bp Feature: domain Description: TM_helix Location: 134451-134592 bp Feature: domain Description: TM_helix Location: 134451-134592 bp Feature: domain Description: TM_helix Location: 134769-134877 bp Feature: domain Description: TM_helix Location: 1347 69-13487 7 bp Feature: gene Location: 135312-135752 bp Feature: domain Description: Polyketide_cyc2 Location: 135327-135744 bp Feature: domain Description: Polyketide_cyc2 Location: 135327 -1357 44 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: JACJSF010000014.1 (151612 bp)
Overview 1 RT 1: 84821-90509 bp Neighborhood of RT #1 [84821, 90509] clpC RVT-Retrons Feature: gene Location: 84821-87289 bp Feature: domain Description: clpC Location: 84824-87233 bp Feature: domain Description: clpC Location: 8 48 24-8 7233 bp Feature: gene Location: 87426-88343 bp Feature: gene Location: 88366-89433 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 88540-89143 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8 8 540-8 9143 bp Feature: gene Location: 89954-90292 bp Feature: gene Location: 90324-90509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: JACJSF010000202.1 (5067 bp)
Overview 1 RT 1: 282-3757 bp Neighborhood of RT #1 [282, 3780] DDE_Tnp_1 RVT-GII GIIM McrA PinE Feature: gene Location: 282-782 bp Feature: gene Location: 831-1589 bp Feature: domain Description: DDE_Tnp_1 Location: 879-1338 bp Feature: domain Description: DDE_Tnp_1 Location: 879 -1338 bp Feature: gene Location: 1601-2680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1613-2078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1613-2078 bp Feature: domain Description: GIIM Note: maturase Location: 2162-2390 bp Feature: domain Description: GIIM Note: maturase Location: 2162-239 0 bp Feature: domain Description: McrA Location: 2459-2636 bp Feature: domain Description: McrA Location: 2459 -2636 bp Feature: gene Location: 2515-3015 bp Feature: gene Location: 3055-3780 bp Feature: domain Description: PinE Location: 3097-3757 bp Feature: domain Description: PinE Location: 309 7-3757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT