myRT

myRT report for GCA_014698355.1_ASM1469835v1

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Seq: JACJSU010000001.1 (648438 bp)
Overview 1 RT 1: 385437-391473 bp Neighborhood of RT #1 [385437, 391473] COG1900 group_II_RT_mat RVT-UG13 PerM Feature: gene Location: 385437-386471 bp Feature: gene Location: 386492-387661 bp Feature: domain Description: COG1900 Location: 386495-387629 bp Feature: domain Description: COG1 900 Location: 386495-387629 bp Feature: gene Location: 387832-389652 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 387904-388174 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 387904-3881 74 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 388252-388720 bp Feature: RT Description: RVT-UG1 3 Note: UG1 3 RT Location: 388252-388720 bp Feature: gene Location: 390074-391192 bp Feature: domain Description: PerM Location: 390086-391100 bp Feature: domain Description: PerM Location: 390086-391 1 00 bp Feature: gene Location: 391282-391473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1900 (Uncharacterized conserved protein, DUF39 family ), group_II_RT_mat (TIGR04416), RVT-UG13, PerM (COG0628)

Seq: JACJSU010000005.1 (416422 bp)
Overview 1 RT 1: 277933-283862 bp Neighborhood of RT #1 [277933, 283862] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR TIGR03985 Feature: gene Location: 277933-278208 bp Feature: domain Description: Cas2_I_II_III Location: 277942-278167 bp Feature: domain Description: Cas2 _I_II_III Location: 2 77942 -2 78167 bp Feature: gene Location: 278388-279569 bp Feature: domain Description: Cas1_I-II-III Location: 278577-279531 bp Feature: domain Description: Cas1_I-II-III Location: 2 78577-2 79531 bp Feature: gene Location: 279587-280522 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 279794-280400 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 79794-2 80400 bp Feature: gene Location: 280724-282196 bp Feature: domain Description: TIGR03985 Location: 281453-282188 bp Feature: domain Description: TIGR03985 Location: 2 81453-2 82 188 bp Feature: gene Location: 282342-283862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR, TIGR03985 (CRISPR-associated protein, TIGR03985 family)

Seq: JACJSU010000011.1 (243352 bp)
Overview 1 RT 1: 129643-132923 bp Neighborhood of RT #1 [129643, 132940] DUF3148 SDR_c5 RVT_N RVT-GII McrA YdfG Feature: gene Location: 129643-129948 bp Feature: domain Description: DUF3148 Location: 129721-129904 bp Feature: domain Description: DUF3 148 Location: 129721-129904 bp Feature: gene Location: 129958-130341 bp Feature: domain Description: SDR_c5 Location: 129961-130327 bp Feature: domain Description: SDR_c5 Location: 129961-13 03 27 bp Feature: gene Location: 130478-132052 bp Feature: domain Description: RVT_N Location: 130514-130757 bp Feature: domain Description: RVT_N Location: 13 0514-13 0757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130811-131468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 0811-13 1468 bp Feature: domain Description: McrA Location: 131699-132023 bp Feature: domain Description: McrA Location: 13 1699-13 2023 bp Feature: gene Location: 132325-132504 bp Feature: gene Location: 132587-132940 bp Feature: domain Description: YdfG Location: 132593-132923 bp Feature: domain Description: YdfG Location: 13 2593 -13 2923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3148 (pfam11347), SDR_c5 (cd05346), RVT_N (pfam13655), RVT-GII, McrA (COG4058), YdfG (COG4221)

Seq: JACJSU010000013.1 (203407 bp)
Overview 1 RT 1: 44500-52849 bp 2 RT 2: 55269-60734 bp 3 RT 3: 108289-116861 bp Neighborhood of RT #1 [44500, 53163] HTH_XRE RVT-GII McrA PinE Zn_ribbon_recom RVT_N RVT-GII COG5659 Neighborhood of RT #2 [55269, 60734] INT_FimBE_like RVT_N RVT-GII GIIM Neighborhood of RT #3 [108289, 116995] PRK07399 PRK07452 RVT_N RVT-GII McrA PRK07452 COG2251 KOG1805 KOG1805 Feature: gene Location: 44500-45153 bp Feature: gene Location: 46389-46817 bp Feature: domain Description: HTH_XRE Location: 46422-46533 bp Feature: domain Description: HTH_XRE Location: 4 64 22-4 6533 bp Feature: gene Location: 47345-48358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47351-47774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 7351-4 7774 bp Feature: domain Description: McrA Location: 48005-48329 bp Feature: domain Description: McrA Location: 4 8005-4 8329 bp Feature: gene Location: 48421-48693 bp Feature: gene Location: 48733-50079 bp Feature: domain Description: PinE Location: 48775-49447 bp Feature: domain Description: PinE Location: 4 8775-4 94 4 7 bp Feature: domain Description: Zn_ribbon_recom Location: 49717-49873 bp Feature: domain Description: Zn_ribbon_recom Location: 4 9717-4 9873 bp Feature: gene Location: 50096-50779 bp Feature: gene Location: 50788-51369 bp Feature: domain Description: RVT_N Location: 50839-51079 bp Feature: domain Description: RVT_N Location: 50839-51079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51124-51358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51124 -51358 bp Feature: gene Location: 51460-51735 bp Feature: gene Location: 51835-53163 bp Feature: domain Description: COG5659 Location: 51889-52849 bp Feature: domain Description: COG5659 Location: 51889-5284 9 bp Feature: gene Location: 55269-56189 bp Feature: gene Location: 56340-56972 bp Feature: domain Description: INT_FimBE_like Location: 56436-56958 bp Feature: domain Description: INT_FimBE_like Location: 564 36-56958 bp Feature: gene Location: 56988-58349 bp Feature: domain Description: RVT_N Location: 57039-57279 bp Feature: domain Description: RVT_N Location: 57039-57279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57324-57948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57324 -5794 8 bp Feature: domain Description: GIIM Note: maturase Location: 58008-58233 bp Feature: domain Description: GIIM Note: maturase Location: 58008-58233 bp Feature: gene Location: 58579-58797 bp Feature: gene Location: 59571-60734 bp Feature: gene Location: 108289-109284 bp Feature: domain Description: PRK07399 Location: 108400-109276 bp Feature: domain Description: PRK07399 Location: 1084 00-109276 bp Feature: gene Location: 109402-109833 bp Feature: domain Description: PRK07452 Location: 109468-109828 bp Feature: domain Description: PRK074 52 Location: 1094 68-109828 bp Feature: gene Location: 109848-111422 bp Feature: domain Description: RVT_N Location: 109884-110130 bp Feature: domain Description: RVT_N Location: 109884 -110130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110181-110838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110181-110838 bp Feature: domain Description: McrA Location: 111075-111393 bp Feature: domain Description: McrA Location: 111075-111393 bp Feature: gene Location: 111954-112580 bp Feature: domain Description: PRK07452 Location: 111957-112560 bp Feature: domain Description: PRK074 52 Location: 111957-112560 bp Feature: gene Location: 112829-116995 bp Feature: domain Description: COG2251 Location: 113570-113723 bp Feature: domain Description: COG2251 Location: 113570-113723 bp Feature: domain Description: KOG1805 Location: 115541-116195 bp Feature: domain Description: KOG1805 Location: 11554 1-116195 bp Feature: domain Description: KOG1805 Location: 116522-116861 bp Feature: domain Description: KOG1805 Location: 116522-116861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII, McrA (COG4058), PinE (COG1961), Zn_ribbon_recom (pfam13408), RVT_N (pfam13655), COG5659 (SRSO17 transposase ), INT_FimBE_like (cd01197), GIIM (pfam08388), PRK07399 (DNA polymerase III subunit delta'; Validated)
PRK07452 (DNA polymerase III subunit delta; Validated), COG2251 (Predicted nuclease, RecB family ), KOG1805 (KOG1805, DNA replication helicase )