myRT

myRT report for GCA_014698385.1_ASM1469838v1

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Seq: JACJSX010000311.1 (1543 bp)
Overview 1 RT 1: 3-1296 bp Neighborhood of RT #1 [3, 1541] RVT_N RVT-GII GIIM Feature: gene Location: 3-1541 bp Feature: domain Description: RVT_N Location: 21-264 bp Feature: domain Description: RVT_N Location: 21 -264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309-978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309-978 bp Feature: domain Description: GIIM Note: maturase Location: 1083-1296 bp Feature: domain Description: GIIM Note: maturase Location: 1 083-1 296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JACJSX010000009.1 (80243 bp)
Overview 1 RT 1: 3-2151 bp Neighborhood of RT #1 [3, 2189] RVT-GII GIIM McrA PIN_VapC4-5_FitB-like Feature: gene Location: 3-1169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-42 9 bp Feature: domain Description: GIIM Note: maturase Location: 534-735 bp Feature: domain Description: GIIM Note: maturase Location: 534-735 bp Feature: domain Description: McrA Location: 912-1143 bp Feature: domain Description: McrA Location: 912 -1143 bp Feature: gene Location: 1243-1500 bp Feature: gene Location: 1782-2189 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 1794-2151 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 1794-2 151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), PIN_VapC4-5_FitB-like (cd18754)

Seq: JACJSX010000292.1 (1743 bp)
Overview 1 RT 1: 3-1531 bp Neighborhood of RT #1 [3, 1548] RVT-GII GIIM HNH RVT_N RVT-GII Feature: gene Location: 3-1148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-43 5 bp Feature: domain Description: GIIM Note: maturase Location: 540-768 bp Feature: domain Description: GIIM Note: maturase Location: 540-768 bp Feature: domain Description: HNH Note: nucleases Location: 1011-1146 bp Feature: domain Description: HNH Note: nucleases Location: 1011-1146 bp Feature: gene Location: 1138-1548 bp Feature: domain Description: RVT_N Location: 1177-1258 bp Feature: domain Description: RVT_N Location: 1177-1258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1303-1531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 03 -153 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844), RVT_N (pfam13655)

Seq: JACJSX010000054.1 (34858 bp)
Overview 1 RT 1: 1-3521 bp Neighborhood of RT #1 [1, 3532] RVT-GII GIIM HNH PLN02578 PLN02578 infC Feature: gene Location: 1-1395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-658 bp Feature: domain Description: GIIM Note: maturase Location: 769-967 bp Feature: domain Description: GIIM Note: maturase Location: 769-967 bp Feature: domain Description: HNH Note: nucleases Location: 1231-1366 bp Feature: domain Description: HNH Note: nucleases Location: 1231-1366 bp Feature: gene Location: 1751-2812 bp Feature: domain Description: PLN02578 Location: 1910-2198 bp Feature: domain Description: PLN02578 Location: 1910-2198 bp Feature: domain Description: PLN02578 Location: 2378-2783 bp Feature: domain Description: PLN02578 Location: 2378-2783 bp Feature: gene Location: 2987-3532 bp Feature: domain Description: infC Location: 3005-3521 bp Feature: domain Description: infC Location: 3005-3521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844), PLN02578 (hydrolase), infC (TIGR00168)

Seq: JACJSX010000265.1 (2098 bp)
Overview 1 RT 1: 1-2003 bp Neighborhood of RT #1 [1, 2003] RVT-GII GIIM McrA Feature: gene Location: 1-1482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-65 5 bp Feature: domain Description: GIIM Note: maturase Location: 760-967 bp Feature: domain Description: GIIM Note: maturase Location: 760-967 bp Feature: domain Description: McrA Location: 1096-1387 bp Feature: domain Description: McrA Location: 1096-1387 bp Feature: gene Location: 1662-2003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJSX010000226.1 (3215 bp)
Overview 1 RT 1: 30-3215 bp Neighborhood of RT #1 [30, 3214] RVT_N RVT-GII RVT-GII GIIM HNH RVT_N RVT-GII Feature: gene Location: 30-254 bp Feature: domain Description: RVT_N Location: 99-249 bp Feature: domain Description: RVT_N Location: 99-249 bp Feature: gene Location: 433-687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442-670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442-6 70 bp Feature: gene Location: 677-1849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 83-1109 bp Feature: domain Description: GIIM Note: maturase Location: 1214-1427 bp Feature: domain Description: GIIM Note: maturase Location: 1214-1427 bp Feature: domain Description: HNH Note: nucleases Location: 1685-1820 bp Feature: domain Description: HNH Note: nucleases Location: 16 85-1820 bp Feature: gene Location: 2193-2384 bp Feature: gene Location: 2710-2934 bp Feature: domain Description: RVT_N Location: 2779-2929 bp Feature: domain Description: RVT_N Location: 2779-2929 bp Feature: gene Location: 3068-3214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3143-3215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3143-3215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JACJSX010000126.1 (12609 bp)
Overview 1 RT 1: 2-6425 bp 2 RT 2: 9785-12367 bp Neighborhood of RT #1 [2, 6439] DDE_3 RVT-GII GIIM HNHc chaperone_ClpB PRK09303 TMAO_torS TMAO_torS Neighborhood of RT #2 [9785, 12367] GatC PRK02603 RVT-GII GIIM HNH Feature: gene Location: 2-142 bp Feature: domain Description: DDE_3 Location: 5-134 bp Feature: domain Description: DDE_3 Location: 5-134 bp Feature: gene Location: 234-1403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240-669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240-669 bp Feature: domain Description: GIIM Note: maturase Location: 768-999 bp Feature: domain Description: GIIM Note: maturase Location: 7 68-999 bp Feature: domain Description: HNHc Note: nucleases Location: 1212-1353 bp Feature: domain Description: HNHc Note: nucleases Location: 1212-1353 bp Feature: gene Location: 1882-4500 bp Feature: domain Description: chaperone_ClpB Location: 1909-4462 bp Feature: domain Description: chaperone_ClpB Location: 1909-4462 bp Feature: gene Location: 4718-6439 bp Feature: domain Description: PRK09303 Location: 4907-5195 bp Feature: domain Description: PRK09303 Location: 4907 -5195 bp Feature: domain Description: TMAO_torS Location: 5195-5501 bp Feature: domain Description: TMAO_torS Location: 5195-5501 bp Feature: domain Description: TMAO_torS Location: 5576-6425 bp Feature: domain Description: TMAO_torS Location: 557 6-6425 bp Feature: gene Location: 9785-10078 bp Feature: domain Description: GatC Location: 9788-10067 bp Feature: domain Description: GatC Location: 97 88-10067 bp Feature: gene Location: 10099-10620 bp Feature: domain Description: PRK02603 Location: 10102-10615 bp Feature: domain Description: PRK02603 Location: 10102-10615 bp Feature: gene Location: 10840-12177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10843-11440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10843-11440 bp Feature: domain Description: GIIM Note: maturase Location: 11548-11749 bp Feature: domain Description: GIIM Note: maturase Location: 11548-117 49 bp Feature: domain Description: HNH Note: nucleases Location: 12013-12148 bp Feature: domain Description: HNH Note: nucleases Location: 12013-12148 bp Feature: gene Location: 12203-12367 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388), HNHc (smart00507), chaperone_ClpB (TIGR03346), PRK09303 (histidine kinase), TMAO_torS (TIGR02956), GatC (COG0721), PRK02603 (photosystem I assembly protein Ycf3; Provisional), HNH (pfam01844)

Seq: JACJSX010000024.1 (51908 bp)
Overview 1 RT 1: 32216-40370 bp Neighborhood of RT #1 [32216, 40393] KOG4178 RVT-GII DUF1815 DUF2839 RVT_N RVT-GII GIIM NagA COG3744 Feature: gene Location: 32216-33118 bp Feature: domain Description: KOG4178 Location: 32264-33113 bp Feature: domain Description: KOG4178 Location: 32264-33113 bp Feature: gene Location: 33194-33475 bp Feature: gene Location: 34082-34474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34307-34469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34307-34469 bp Feature: gene Location: 35001-35159 bp Feature: gene Location: 35483-35827 bp Feature: domain Description: DUF1815 Location: 35489-35780 bp Feature: domain Description: DUF18 15 Location: 3548 9-3578 0 bp Feature: gene Location: 36247-36426 bp Feature: domain Description: DUF2839 Location: 36274-36415 bp Feature: domain Description: DUF28 39 Location: 36274-36415 bp Feature: gene Location: 36528-38021 bp Feature: domain Description: RVT_N Location: 36573-36819 bp Feature: domain Description: RVT_N Location: 36573-368 19 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36903-37527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36903-37527 bp Feature: domain Description: GIIM Note: maturase Location: 37626-37860 bp Feature: domain Description: GIIM Note: maturase Location: 37626-378 60 bp Feature: gene Location: 38770-39936 bp Feature: domain Description: NagA Location: 38851-39841 bp Feature: domain Description: NagA Location: 38 8 51-398 41 bp Feature: gene Location: 39992-40393 bp Feature: domain Description: COG3744 Location: 40001-40370 bp Feature: domain Description: COG3744 Location: 40001-40370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG4178 (KOG4178, Soluble epoxide hydrolase ), RVT-GII, DUF1815 (pfam08844), DUF2839 (pfam10999), RVT_N (pfam13655), GIIM (pfam08388), NagA (COG1820), COG3744 (PIN domain nuclease, a component of toxin-antitoxin system (PIN domain) )

Seq: JACJSX010000229.1 (3177 bp)
Overview 1 RT 1: 245-2657 bp Neighborhood of RT #1 [245, 2686] RVT-GII GIIM LipA Feature: gene Location: 245-472 bp Feature: gene Location: 492-1217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498-924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49 8-9 24 bp Feature: domain Description: GIIM Note: maturase Location: 1029-1212 bp Feature: domain Description: GIIM Note: maturase Location: 1029 -1212 bp Feature: gene Location: 1808-2686 bp Feature: domain Description: LipA Location: 1817-2657 bp Feature: domain Description: LipA Location: 1817-2657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LipA (COG0320)

Seq: JACJSX010000308.1 (1547 bp)
Overview 1 RT 1: 252-1305 bp Neighborhood of RT #1 [252, 1305] RVT-GII Feature: gene Location: 252-746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258-684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258-684 bp Feature: gene Location: 764-892 bp Feature: gene Location: 1024-1305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACJSX010000139.1 (10762 bp)
Overview 1 RT 1: 245-4451 bp Neighborhood of RT #1 [245, 4471] RVT-GII GIIM HNHc ParE_toxin COG3975 Feature: gene Location: 245-502 bp Feature: gene Location: 668-1684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 701-926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 701-926 bp Feature: domain Description: GIIM Note: maturase Location: 1031-1232 bp Feature: domain Description: GIIM Note: maturase Location: 1031-1232 bp Feature: domain Description: HNHc Note: nucleases Location: 1466-1631 bp Feature: domain Description: HNHc Note: nucleases Location: 1466-1631 bp Feature: gene Location: 2215-2517 bp Feature: domain Description: ParE_toxin Location: 2230-2491 bp Feature: domain Description: ParE_toxin Location: 2230-2491 bp Feature: gene Location: 2648-4471 bp Feature: domain Description: COG3975 Location: 2732-4451 bp Feature: domain Description: COG3975 Location: 2732-4451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), ParE_toxin (pfam05016), COG3975 (Predicted metalloprotease, contains C-terminal PDZ domain )

Seq: JACJSX010000239.1 (2770 bp)
Overview 1 RT 1: 816-2739 bp Neighborhood of RT #1 [816, 2768] RVT-GII GIIM HNH Feature: gene Location: 816-1244 bp Feature: gene Location: 1259-1447 bp Feature: gene Location: 1605-2768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1608-2034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1608-2034 bp Feature: domain Description: GIIM Note: maturase Location: 2133-2340 bp Feature: domain Description: GIIM Note: maturase Location: 2133-2340 bp Feature: domain Description: HNH Note: nucleases Location: 2604-2739 bp Feature: domain Description: HNH Note: nucleases Location: 2604-2739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JACJSX010000140.1 (10660 bp)
Overview 1 RT 1: 7093-10418 bp Neighborhood of RT #1 [7093, 10444] YebA RVT-GII GIIM McrA Feature: gene Location: 7093-7926 bp Feature: domain Description: YebA Location: 7366-7837 bp Feature: domain Description: YebA Location: 7366-7837 bp Feature: gene Location: 8468-8710 bp Feature: gene Location: 8930-10444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9005-9656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9005-9656 bp Feature: domain Description: GIIM Note: maturase Location: 9791-10010 bp Feature: domain Description: GIIM Note: maturase Location: 9791-10010 bp Feature: domain Description: McrA Location: 10148-10418 bp Feature: domain Description: McrA Location: 10148-10418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YebA (COG1305), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJSX010000224.1 (3273 bp)
Overview 1 RT 1: 1381-3145 bp Neighborhood of RT #1 [1381, 3183] DNA_processg_A GIIM HNHc RVT-GII Feature: gene Location: 1381-1884 bp Feature: domain Description: DNA_processg_A Location: 1450-1696 bp Feature: domain Description: DNA_processg_A Location: 14 50-1696 bp Feature: gene Location: 1987-2631 bp Feature: domain Description: GIIM Note: maturase Location: 1993-2197 bp Feature: domain Description: GIIM Note: maturase Location: 1993-2197 bp Feature: domain Description: HNHc Note: nucleases Location: 2416-2575 bp Feature: domain Description: HNHc Note: nucleases Location: 2416-2575 bp Feature: gene Location: 2758-3183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2764-3145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2764-314 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA_processg_A (pfam02481), GIIM (pfam08388), HNHc (smart00507), RVT-GII

Seq: JACJSX010000305.1 (1590 bp)
Overview 1 RT 1: 209-1588 bp Neighborhood of RT #1 [209, 1587] RVT_N RVT-GII GIIM Feature: gene Location: 209-433 bp Feature: domain Description: RVT_N Location: 278-428 bp Feature: domain Description: RVT_N Location: 278-428 bp Feature: gene Location: 637-1587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643-1294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643-1294 bp Feature: domain Description: GIIM Note: maturase Location: 1402-1588 bp Feature: domain Description: GIIM Note: maturase Location: 1402-15 88 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JACJSX010000252.1 (2416 bp)
Overview 1 RT 1: 859-2178 bp Neighborhood of RT #1 [859, 2204] RVT_N RVT-GII Feature: gene Location: 859-990 bp Feature: gene Location: 1053-1181 bp Feature: gene Location: 1608-2204 bp Feature: domain Description: RVT_N Location: 1677-1920 bp Feature: domain Description: RVT_N Location: 16 77-1920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1965-2178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1965-2178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJSX010000206.1 (4248 bp)
Overview 1 RT 1: 126-3311 bp Neighborhood of RT #1 [126, 3311] HNHc RVT-GII GIIM HNHc RVT_N Feature: gene Location: 126-611 bp Feature: domain Description: HNHc Note: nucleases Location: 411-546 bp Feature: domain Description: HNHc Note: nucleases Location: 411-546 bp Feature: gene Location: 948-2366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 954-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 954-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1710-1932 bp Feature: domain Description: GIIM Note: maturase Location: 17 10-1932 bp Feature: domain Description: HNHc Note: nucleases Location: 2154-2313 bp Feature: domain Description: HNHc Note: nucleases Location: 2154-2313 bp Feature: gene Location: 2570-2794 bp Feature: domain Description: RVT_N Location: 2639-2789 bp Feature: domain Description: RVT_N Location: 2639-2789 bp Feature: gene Location: 3120-3311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: JACJSX010000304.1 (1599 bp)
Overview 1 RT 1: 116-1234 bp Neighborhood of RT #1 [116, 1234] RVT_N RVT-GII Feature: gene Location: 116-694 bp Feature: domain Description: RVT_N Location: 185-428 bp Feature: domain Description: RVT_N Location: 18 5-428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473-671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473-671 bp Feature: gene Location: 770-943 bp Feature: gene Location: 977-1234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJSX010000238.1 (2771 bp)
Overview 1 RT 1: 271-2754 bp Neighborhood of RT #1 [271, 2754] DUF2973 DUF2605 RVT-GII GIIM McrA Feature: gene Location: 271-582 bp Feature: domain Description: DUF2973 Location: 274-493 bp Feature: domain Description: DUF2973 Location: 274-493 bp Feature: gene Location: 777-1118 bp Feature: domain Description: DUF2605 Location: 798-1077 bp Feature: domain Description: DUF2605 Location: 798-1077 bp Feature: gene Location: 1207-2424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1213-1594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1213-1594 bp Feature: domain Description: GIIM Note: maturase Location: 1714-1912 bp Feature: domain Description: GIIM Note: maturase Location: 1714-19 12 bp Feature: domain Description: McrA Location: 2077-2326 bp Feature: domain Description: McrA Location: 2077-2326 bp Feature: gene Location: 2461-2754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2973 (pfam11189), DUF2605 (pfam10792), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJSX010000168.1 (6561 bp)
Overview 1 RT 1: 2-5784 bp Neighborhood of RT #1 [2, 5810] RVT-GII GIIM RVT_N HTH_Tnp_IS630 DDE_3 RVT_N RVT-GII Feature: gene Location: 2-199 bp Feature: gene Location: 688-912 bp Feature: gene Location: 1350-2192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1356-1782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1356-1782 bp Feature: domain Description: GIIM Note: maturase Location: 1887-2109 bp Feature: domain Description: GIIM Note: maturase Location: 1887-2109 bp Feature: gene Location: 2372-2785 bp Feature: domain Description: RVT_N Location: 2441-2684 bp Feature: domain Description: RVT_N Location: 2441-2684 bp Feature: gene Location: 3071-3307 bp Feature: gene Location: 3519-4409 bp Feature: domain Description: HTH_Tnp_IS630 Location: 3603-3963 bp Feature: domain Description: HTH_Tnp_IS630 Location: 3603-3963 bp Feature: domain Description: DDE_3 Location: 4005-4401 bp Feature: domain Description: DDE_3 Location: 4005-4401 bp Feature: gene Location: 5213-5626 bp Feature: domain Description: RVT_N Location: 5282-5525 bp Feature: domain Description: RVT_N Location: 5282-5525 bp Feature: gene Location: 5586-5810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5592-5784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5592-5784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), HTH_Tnp_IS630 (pfam01710), DDE_3 (pfam13358)

Seq: JACJSX010000268.1 (2077 bp)
Overview 1 RT 1: 224-2075 bp Neighborhood of RT #1 [224, 2075] RVT-GII GIIM HNHc Feature: gene Location: 224-451 bp Feature: gene Location: 471-1643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477-903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477-903 bp Feature: domain Description: GIIM Note: maturase Location: 1011-1233 bp Feature: domain Description: GIIM Note: maturase Location: 1011-1233 bp Feature: domain Description: HNHc Note: nucleases Location: 1452-1593 bp Feature: domain Description: HNHc Note: nucleases Location: 1452-1593 bp Feature: gene Location: 1926-2075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJSX010000003.1 (120051 bp)
Overview 1 RT 1: 2-3393 bp Neighborhood of RT #1 [2, 5207] RVT-GII HsdM Feature: gene Location: 2-229 bp Feature: gene Location: 235-813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-811 bp Feature: gene Location: 1521-1745 bp Feature: gene Location: 2046-5207 bp Feature: domain Description: HsdM Location: 3042-3393 bp Feature: domain Description: HsdM Location: 3042-3393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HsdM (COG0286)

Seq: JACJSX010000271.1 (2033 bp)
Overview 1 RT 1: 416-1568 bp Neighborhood of RT #1 [416, 1951] RVT-GII Feature: gene Location: 416-1951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878-1568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878-1568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACJSX010000132.1 (11958 bp)
Overview 1 RT 1: 8885-11692 bp Neighborhood of RT #1 [8885, 11760] SH3_3 SH3_3 pheS RVT-GII GIIM HNHc Feature: gene Location: 8885-9541 bp Feature: domain Description: SH3_3 Location: 9074-9239 bp Feature: domain Description: SH3_3 Location: 9074-9239 bp Feature: domain Description: SH3_3 Location: 9353-9527 bp Feature: domain Description: SH3_3 Location: 9353-9527 bp Feature: gene Location: 9553-10554 bp Feature: domain Description: pheS Location: 9583-10552 bp Feature: domain Description: pheS Location: 9583-10552 bp Feature: gene Location: 10648-11760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10654-11002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10654-11002 bp Feature: domain Description: GIIM Note: maturase Location: 11107-11317 bp Feature: domain Description: GIIM Note: maturase Location: 11107-11317 bp Feature: domain Description: HNHc Note: nucleases Location: 11551-11692 bp Feature: domain Description: HNHc Note: nucleases Location: 11551-11692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SH3_3 (pfam08239), pheS (TIGR00468), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJSX010000125.1 (12652 bp)
Overview 1 RT 1: 6374-12566 bp Neighborhood of RT #1 [6374, 12649] PLN02696 glgA RVT_N RVT-GII GIIM McrA InsB Feature: gene Location: 6374-7564 bp Feature: domain Description: PLN02696 Location: 6380-7550 bp Feature: domain Description: PLN02696 Location: 6380-7550 bp Feature: gene Location: 7661-9088 bp Feature: domain Description: glgA Location: 7664-9026 bp Feature: domain Description: glgA Location: 7664-9026 bp Feature: gene Location: 9572-11323 bp Feature: domain Description: RVT_N Location: 9611-9854 bp Feature: domain Description: RVT_N Location: 9611-9854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9899-10571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9899-10571 bp Feature: domain Description: GIIM Note: maturase Location: 10685-10880 bp Feature: domain Description: GIIM Note: maturase Location: 10685-10880 bp Feature: domain Description: McrA Location: 11033-11297 bp Feature: domain Description: McrA Location: 11033-11297 bp Feature: gene Location: 12314-12649 bp Feature: domain Description: InsB Location: 12335-12566 bp Feature: domain Description: InsB Location: 12335-125 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLN02696 (1-deoxy-D-xylulose-5-phosphate reductoisomerase), glgA (TIGR02095), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), InsB (COG1662)

Seq: JACJSX010000199.1 (4711 bp)
Overview 1 RT 1: 3507-4473 bp Neighborhood of RT #1 [3507, 4499] RVT_N RVT_N RVT-GII Feature: gene Location: 3507-3647 bp Feature: gene Location: 3867-4073 bp Feature: domain Description: RVT_N Location: 3918-4068 bp Feature: domain Description: RVT_N Location: 3918-4068 bp Feature: gene Location: 4095-4499 bp Feature: domain Description: RVT_N Location: 4134-4215 bp Feature: domain Description: RVT_N Location: 4134-4215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4260-4473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 426 0-4473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJSX010000006.1 (98034 bp)
Overview 1 RT 1: 95495-97704 bp Neighborhood of RT #1 [95495, 97754] petB RVT-GII GIIM HNHc Feature: gene Location: 95495-96163 bp Feature: domain Description: petB Location: 95522-96161 bp Feature: domain Description: petB Location: 95522-96161 bp Feature: gene Location: 96325-96501 bp Feature: gene Location: 96525-97754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96546-96996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96546-96996 bp Feature: domain Description: GIIM Note: maturase Location: 97101-97308 bp Feature: domain Description: GIIM Note: maturase Location: 97101-97308 bp Feature: domain Description: HNHc Note: nucleases Location: 97557-97704 bp Feature: domain Description: HNHc Note: nucleases Location: 97557-97704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT petB (CHL00070), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJSX010000084.1 (22790 bp)
Overview 1 RT 1: 20829-22759 bp Neighborhood of RT #1 [20829, 22788] RVT-GII GIIM HNH Feature: gene Location: 20829-21101 bp Feature: gene Location: 21254-21532 bp Feature: gene Location: 21664-22788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21670-22054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21670-22054 bp Feature: domain Description: GIIM Note: maturase Location: 22153-22381 bp Feature: domain Description: GIIM Note: maturase Location: 22153-22381 bp Feature: domain Description: HNH Note: nucleases Location: 22624-22759 bp Feature: domain Description: HNH Note: nucleases Location: 22624-22759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JACJSX010000232.1 (3016 bp)
Overview 1 RT 1: 1409-2890 bp Neighborhood of RT #1 [1409, 2895] RVT-GII GIIM Feature: gene Location: 1409-1837 bp Feature: gene Location: 1910-2056 bp Feature: gene Location: 2158-2895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2164-2590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2164-2590 bp Feature: domain Description: GIIM Note: maturase Location: 2725-2890 bp Feature: domain Description: GIIM Note: maturase Location: 2725-2890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACJSX010000108.1 (16079 bp)
Overview 1 RT 1: 277-3406 bp Neighborhood of RT #1 [277, 3406] RVT-GII GIIM McrA Feature: gene Location: 277-600 bp Feature: gene Location: 955-1092 bp Feature: gene Location: 1254-2741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1332-1983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1332-1983 bp Feature: domain Description: GIIM Note: maturase Location: 2088-2316 bp Feature: domain Description: GIIM Note: maturase Location: 2088-2316 bp Feature: domain Description: McrA Location: 2451-2712 bp Feature: domain Description: McrA Location: 2451-2712 bp Feature: gene Location: 2849-3139 bp Feature: gene Location: 3239-3406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJSX010000250.1 (2475 bp)
Overview 1 RT 1: 621-2329 bp Neighborhood of RT #1 [621, 2397] RVT_N RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 621-1223 bp Feature: domain Description: RVT_N Location: 690-933 bp Feature: domain Description: RVT_N Location: 690-933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978-1206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978-1206 bp Feature: gene Location: 1177-2397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1213-1645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1213-1645 bp Feature: domain Description: GIIM Note: maturase Location: 1744-1972 bp Feature: domain Description: GIIM Note: maturase Location: 1744-1972 bp Feature: domain Description: HNHc Note: nucleases Location: 2188-2329 bp Feature: domain Description: HNHc Note: nucleases Location: 2188-2329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJSX010000007.1 (86020 bp)
Overview 1 RT 1: 25935-31218 bp Neighborhood of RT #1 [25935, 31218] PBP2_PotD_PotF_like PotA RVT_N RVT-GII GIIM HNHc Feature: gene Location: 25935-27068 bp Feature: domain Description: PBP2_PotD_PotF_like Location: 26103-27048 bp Feature: domain Description: PBP2_PotD_PotF_like Location: 26103-27048 bp Feature: gene Location: 27115-28260 bp Feature: domain Description: PotA Location: 27166-28240 bp Feature: domain Description: PotA Location: 27166-28240 bp Feature: gene Location: 28386-30152 bp Feature: domain Description: RVT_N Location: 28455-28698 bp Feature: domain Description: RVT_N Location: 28455-28698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28743-29412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28743-29412 bp Feature: domain Description: GIIM Note: maturase Location: 29517-29730 bp Feature: domain Description: GIIM Note: maturase Location: 29517-29730 bp Feature: domain Description: HNHc Note: nucleases Location: 29961-30120 bp Feature: domain Description: HNHc Note: nucleases Location: 29961-30120 bp Feature: gene Location: 30103-30588 bp Feature: gene Location: 31078-31218 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_PotD_PotF_like (cd13590), PotA (COG3842), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJSX010000005.1 (101397 bp)
Overview 1 RT 1: 286-4710 bp Neighborhood of RT #1 [286, 4721] RVT-GII GIIM HNHc MhpC GT4_PimA-like Feature: gene Location: 286-522 bp Feature: gene Location: 538-1728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 544-970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 544-970 bp Feature: domain Description: GIIM Note: maturase Location: 1078-1297 bp Feature: domain Description: GIIM Note: maturase Location: 1078-1297 bp Feature: domain Description: HNHc Note: nucleases Location: 1519-1678 bp Feature: domain Description: HNHc Note: nucleases Location: 1519-1678 bp Feature: gene Location: 1883-2761 bp Feature: domain Description: MhpC Location: 1916-2723 bp Feature: domain Description: MhpC Location: 1916-2723 bp Feature: gene Location: 3558-4721 bp Feature: domain Description: GT4_PimA-like Location: 3819-4710 bp Feature: domain Description: GT4_PimA-like Location: 3819-4710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), MhpC (COG0596), GT4_PimA-like (cd03801)

Seq: JACJSX010000225.1 (3225 bp)
Overview 1 RT 1: 89-2950 bp Neighborhood of RT #1 [89, 3117] RVT-GII GIIM HNHc InsQ Feature: gene Location: 89-361 bp Feature: gene Location: 336-827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342-768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 2-768 bp Feature: gene Location: 858-1556 bp Feature: domain Description: GIIM Note: maturase Location: 906-1125 bp Feature: domain Description: GIIM Note: maturase Location: 906-1125 bp Feature: domain Description: HNHc Note: nucleases Location: 1347-1488 bp Feature: domain Description: HNHc Note: nucleases Location: 134 7-1488 bp Feature: gene Location: 2701-3117 bp Feature: domain Description: InsQ Location: 2716-2950 bp Feature: domain Description: InsQ Location: 2716-2950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), InsQ (COG0675)

Seq: JACJSX010000291.1 (1745 bp)
Overview 1 RT 1: 213-1252 bp Neighborhood of RT #1 [213, 1252] RVT-GII RVT_N Feature: gene Location: 213-437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219-411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219-411 bp Feature: gene Location: 397-810 bp Feature: domain Description: RVT_N Location: 466-709 bp Feature: domain Description: RVT_N Location: 466-709 bp Feature: gene Location: 1094-1252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RVT_N (pfam13655)

Seq: JACJSX010000203.1 (4478 bp)
Overview 1 RT 1: 1-1768 bp Neighborhood of RT #1 [1, 1768] RVT-GII RVT-GII RVT_N Feature: gene Location: 1-510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-352 bp Feature: gene Location: 581-811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 587-794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 587-794 bp Feature: gene Location: 1015-1239 bp Feature: domain Description: RVT_N Location: 1084-1234 bp Feature: domain Description: RVT_N Location: 1084-1234 bp Feature: gene Location: 1523-1768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RVT_N (pfam13655)

Seq: JACJSX010000301.1 (1626 bp)
Overview 1 RT 1: 70-1448 bp Neighborhood of RT #1 [70, 1498] RVT-GII GIIM HNHc Feature: gene Location: 70-288 bp Feature: gene Location: 518-1498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 530-755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 530-755 bp Feature: domain Description: GIIM Note: maturase Location: 860-1094 bp Feature: domain Description: GIIM Note: maturase Location: 860-1094 bp Feature: domain Description: HNHc Note: nucleases Location: 1307-1448 bp Feature: domain Description: HNHc Note: nucleases Location: 1307-1448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJSX010000230.1 (3160 bp)
Overview 1 RT 1: 492-3157 bp Neighborhood of RT #1 [492, 3157] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 492-746 bp Feature: gene Location: 1049-2788 bp Feature: domain Description: RVT_N Location: 1088-1331 bp Feature: domain Description: RVT_N Location: 1088-1331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1376-2048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1376-2048 bp Feature: domain Description: GIIM Note: maturase Location: 2153-2384 bp Feature: domain Description: GIIM Note: maturase Location: 2153-238 4 bp Feature: domain Description: HNHc Note: nucleases Location: 2597-2738 bp Feature: domain Description: HNHc Note: nucleases Location: 2597-2738 bp Feature: gene Location: 3002-3157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJSX010000314.1 (1510 bp)
Overview 1 RT 1: 2-1492 bp Neighborhood of RT #1 [2, 1509] RVT-GII GIIM RVT-GII Feature: gene Location: 2-208 bp Feature: gene Location: 552-1268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 558-984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 558-984 bp Feature: domain Description: GIIM Note: maturase Location: 1092-1266 bp Feature: domain Description: GIIM Note: maturase Location: 1092-1266 bp Feature: gene Location: 1258-1509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1282-1492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1282-1492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACJSX010000244.1 (2627 bp)
Overview 1 RT 1: 105-2474 bp Neighborhood of RT #1 [105, 2474] RVT-GII GIIM McrA RVT-GII RVT_N Feature: gene Location: 105-1277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111-537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111-537 bp Feature: domain Description: GIIM Note: maturase Location: 642-843 bp Feature: domain Description: GIIM Note: maturase Location: 642-843 bp Feature: domain Description: McrA Location: 1005-1251 bp Feature: domain Description: McrA Location: 1005-1251 bp Feature: gene Location: 1267-1497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1273-1480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1273-1480 bp Feature: gene Location: 1700-1924 bp Feature: domain Description: RVT_N Location: 1769-1919 bp Feature: domain Description: RVT_N Location: 1769-1919 bp Feature: gene Location: 2208-2474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655)

Seq: JACJSX010000081.1 (24388 bp)
Overview 1 RT 1: 11847-15847 bp Neighborhood of RT #1 [11847, 16299] PRK07459 RVT_N RVT-GII GIIM NAD_bind_1_Glu_DH Lys9 Feature: gene Location: 11847-12380 bp Feature: gene Location: 12479-12754 bp Feature: domain Description: PRK07459 Location: 12482-12731 bp Feature: domain Description: PRK07459 Location: 12482-12731 bp Feature: gene Location: 13014-14510 bp Feature: domain Description: RVT_N Location: 13044-13290 bp Feature: domain Description: RVT_N Location: 13044-13290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13332-13992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13332-13992 bp Feature: domain Description: GIIM Note: maturase Location: 14094-14331 bp Feature: domain Description: GIIM Note: maturase Location: 14094-14331 bp Feature: gene Location: 14591-14806 bp Feature: gene Location: 15280-16299 bp Feature: domain Description: NAD_bind_1_Glu_DH Location: 15337-15532 bp Feature: domain Description: NAD_bind_1_Glu_DH Location: 15337-15532 bp Feature: domain Description: Lys9 Location: 15565-15847 bp Feature: domain Description: Lys9 Location: 15565-15847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07459 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), NAD_bind_1_Glu_DH (cd01076), Lys9 (COG1748)

Seq: JACJSX010000086.1 (22693 bp)
Overview 1 RT 1: 3340-8352 bp Neighborhood of RT #1 [3340, 8390] TPR_12 RVT-CRISPR Cas1_I-II-III Cas1_I-II-III Cas1_I-II-III Feature: gene Location: 3340-3855 bp Feature: domain Description: TPR_12 Location: 3475-3679 bp Feature: domain Description: TPR_12 Location: 3475-3679 bp Feature: gene Location: 3887-4522 bp Feature: gene Location: 5308-7107 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5329-5932 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5329-5932 bp Feature: domain Description: Cas1_I-II-III Location: 6112-7069 bp Feature: domain Description: Cas1_I-II-III Location: 6112-7069 bp Feature: gene Location: 7162-7314 bp Feature: gene Location: 7494-8390 bp Feature: domain Description: Cas1_I-II-III Location: 7506-7860 bp Feature: domain Description: Cas1_I-II-III Location: 7506-7860 bp Feature: domain Description: Cas1_I-II-III Location: 8016-8352 bp Feature: domain Description: Cas1_I-II-III Location: 8016-8352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_12 (pfam13424), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: JACJSX010000028.1 (48049 bp)
Overview 1 RT 1: 45498-47958 bp Neighborhood of RT #1 [45498, 48002] RVT_N RVT-GII Feature: gene Location: 45498-45851 bp Feature: gene Location: 45924-46640 bp Feature: gene Location: 47382-48002 bp Feature: domain Description: RVT_N Location: 47448-47691 bp Feature: domain Description: RVT_N Location: 47448-47691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47736-47958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47736-47958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJSX010000026.1 (51086 bp)
Overview 1 RT 1: 47069-51083 bp Neighborhood of RT #1 [47069, 51083] GIIM McrA RVT-GII Feature: gene Location: 47069-47920 bp Feature: domain Description: GIIM Note: maturase Location: 47153-47363 bp Feature: domain Description: GIIM Note: maturase Location: 47153-47363 bp Feature: domain Description: McrA Location: 47534-47783 bp Feature: domain Description: McrA Location: 47534-47783 bp Feature: gene Location: 48545-48691 bp Feature: gene Location: 49095-49892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49260-49872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49260-49872 bp Feature: gene Location: 49999-50235 bp Feature: gene Location: 50892-51083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), McrA (COG4058), RVT-GII

Seq: JACJSX010000174.1 (6433 bp)
Overview 1 RT 1: 3974-6310 bp Neighborhood of RT #1 [3974, 6310] RVT-GII Feature: gene Location: 3974-4252 bp Feature: gene Location: 4873-5010 bp Feature: gene Location: 5172-5858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5244-5814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5244-5814 bp Feature: gene Location: 6014-6310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACJSX010000079.1 (25083 bp)
Overview 1 RT 1: 385-5612 bp Neighborhood of RT #1 [385, 5623] Beta4Glucosyltransferase TPR_1 TPR RVT_N RVT-GII GIIM argC Usp Usp Feature: gene Location: 385-1578 bp Feature: domain Description: Beta4Glucosyltransferase Location: 391-976 bp Feature: domain Description: Beta4Glucosyltransferase Location: 391-976 bp Feature: domain Description: TPR_1 Location: 1108-1195 bp Feature: domain Description: TPR_1 Location: 1108-1195 bp Feature: domain Description: TPR Location: 1222-1501 bp Feature: domain Description: TPR Location: 1222-1501 bp Feature: gene Location: 2395-3567 bp Feature: domain Description: RVT_N Location: 2503-2617 bp Feature: domain Description: RVT_N Location: 2503-2617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2914-3175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2914-3175 bp Feature: domain Description: GIIM Note: maturase Location: 3262-3487 bp Feature: domain Description: GIIM Note: maturase Location: 3262-3487 bp Feature: gene Location: 3725-4723 bp Feature: domain Description: argC Location: 3728-4721 bp Feature: domain Description: argC Location: 3728-4721 bp Feature: gene Location: 4772-5623 bp Feature: domain Description: Usp Location: 4775-5168 bp Feature: domain Description: Usp Location: 4775-5168 bp Feature: domain Description: Usp Location: 5195-5612 bp Feature: domain Description: Usp Location: 5195-5612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Beta4Glucosyltransferase (cd02511), TPR_1 (pfam00515), TPR (smart00028), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), argC (TIGR01850), Usp (pfam00582)

Seq: JACJSX010000227.1 (3204 bp)
Overview 1 RT 1: 3-2908 bp Neighborhood of RT #1 [3, 3024] RVT-GII GIIM McrA RVT_N RVT-GII RVT-GII Feature: gene Location: 3-959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24-240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24-240 bp Feature: domain Description: GIIM Note: maturase Location: 345-561 bp Feature: domain Description: GIIM Note: maturase Location: 345-561 bp Feature: domain Description: McrA Location: 705-945 bp Feature: domain Description: McrA Location: 705-945 bp Feature: gene Location: 1826-2050 bp Feature: domain Description: RVT_N Location: 1895-2045 bp Feature: domain Description: RVT_N Location: 1895-2045 bp Feature: gene Location: 2181-2483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2259-2466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2259-2466 bp Feature: gene Location: 2647-3024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2680-2908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2680-2908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655)

Seq: JACJSX010000298.1 (1679 bp)
Overview 1 RT 1: 506-1253 bp Neighborhood of RT #1 [506, 1253] RVT-GII Feature: gene Location: 506-742 bp Feature: gene Location: 758-1063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 764-962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 764-962 bp Feature: gene Location: 1101-1253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACJSX010000264.1 (2104 bp)
Overview 1 RT 1: 1-2102 bp Neighborhood of RT #1 [1, 2102] COG3415 DDE_3 RVT-GII GIIM HNHc Feature: gene Location: 1-672 bp Feature: domain Description: COG3415 Location: 70-442 bp Feature: domain Description: COG3415 Location: 70-442 bp Feature: domain Description: DDE_3 Location: 478-670 bp Feature: domain Description: DDE_3 Location: 478-670 bp Feature: gene Location: 728-1735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740-965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740-965 bp Feature: domain Description: GIIM Note: maturase Location: 1076-1277 bp Feature: domain Description: GIIM Note: maturase Location: 1076-1277 bp Feature: domain Description: HNHc Note: nucleases Location: 1511-1658 bp Feature: domain Description: HNHc Note: nucleases Location: 1511-1658 bp Feature: gene Location: 1977-2102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJSX010000245.1 (2587 bp)
Overview 1 RT 1: 399-2386 bp Neighborhood of RT #1 [399, 2388] RVT_N RVT-GII GIIM HNHc RbcS Feature: gene Location: 399-812 bp Feature: domain Description: RVT_N Location: 468-711 bp Feature: domain Description: RVT_N Location: 468-711 bp Feature: gene Location: 703-1323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-1315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-1315 bp Feature: gene Location: 1546-2184 bp Feature: domain Description: GIIM Note: maturase Location: 1552-1759 bp Feature: domain Description: GIIM Note: maturase Location: 1552-1759 bp Feature: domain Description: HNHc Note: nucleases Location: 1978-2116 bp Feature: domain Description: HNHc Note: nucleases Location: 1978-2116 bp Feature: gene Location: 2197-2388 bp Feature: domain Description: RbcS Location: 2272-2386 bp Feature: domain Description: RbcS Location: 2272-2386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RbcS (pfam12338)

Seq: JACJSX010000272.1 (2029 bp)
Overview 1 RT 1: 3-1871 bp Neighborhood of RT #1 [3, 2026] RVT_N RVT-GII Feature: gene Location: 3-143 bp Feature: gene Location: 791-1015 bp Feature: domain Description: RVT_N Location: 860-1010 bp Feature: domain Description: RVT_N Location: 860-1010 bp Feature: gene Location: 1037-2026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1202-1871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1202-1871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJSX010000088.1 (22138 bp)
Overview 1 RT 1: 116-2585 bp Neighborhood of RT #1 [116, 2590] RVT-GII RVT-GII GIIM McrA FolB Feature: gene Location: 116-247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122-245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122-245 bp Feature: gene Location: 371-1306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377-548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377-548 bp Feature: domain Description: GIIM Note: maturase Location: 653-875 bp Feature: domain Description: GIIM Note: maturase Location: 653-875 bp Feature: domain Description: McrA Location: 1004-1280 bp Feature: domain Description: McrA Location: 1004-1280 bp Feature: gene Location: 2053-2205 bp Feature: gene Location: 2237-2590 bp Feature: domain Description: FolB Location: 2240-2585 bp Feature: domain Description: FolB Location: 2240-2585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), FolB (smart00905)

Seq: JACJSX010000060.1 (31692 bp)
Overview 1 RT 1: 19703-26760 bp Neighborhood of RT #1 [19703, 26867] RVT_N RVT-GII GIIM HNH COG4249 CelA Feature: gene Location: 19703-19843 bp Feature: gene Location: 19921-20166 bp Feature: gene Location: 20451-22220 bp Feature: domain Description: RVT_N Location: 20520-20763 bp Feature: domain Description: RVT_N Location: 20520-20763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20808-21480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20808-21480 bp Feature: domain Description: GIIM Note: maturase Location: 21585-21795 bp Feature: domain Description: GIIM Note: maturase Location: 21585-21795 bp Feature: domain Description: HNH Note: nucleases Location: 22056-22191 bp Feature: domain Description: HNH Note: nucleases Location: 22056-22191 bp Feature: gene Location: 22446-24317 bp Feature: domain Description: COG4249 Location: 22470-23283 bp Feature: domain Description: COG4249 Location: 22470-23283 bp Feature: gene Location: 24606-26867 bp Feature: domain Description: CelA Location: 24861-26760 bp Feature: domain Description: CelA Location: 24861-26760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG4249 (Uncharacterized protein, contains caspase domain ), CelA (TIGR03030)

Seq: JACJSX010000101.1 (17974 bp)
Overview 1 RT 1: 767-5141 bp Neighborhood of RT #1 [767, 5164] RVT-GII GIIM HNH McrA MrcB Feature: gene Location: 767-895 bp Feature: gene Location: 1112-2575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1187-1838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1187-1838 bp Feature: domain Description: GIIM Note: maturase Location: 1952-2162 bp Feature: domain Description: GIIM Note: maturase Location: 1952-2162 bp Feature: domain Description: HNH Note: nucleases Location: 2411-2546 bp Feature: domain Description: HNH Note: nucleases Location: 2411-254 6 bp Feature: gene Location: 2608-3069 bp Feature: domain Description: McrA Location: 2785-3043 bp Feature: domain Description: McrA Location: 2785-3043 bp Feature: gene Location: 3230-5164 bp Feature: domain Description: MrcB Location: 3338-5141 bp Feature: domain Description: MrcB Location: 3338-5141 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844), McrA (COG4058), MrcB (COG0744)

Seq: JACJSX010000296.1 (1695 bp)
Overview 1 RT 1: 3-1214 bp Neighborhood of RT #1 [3, 1214] RVT_N RVT-GII Feature: gene Location: 3-563 bp Feature: domain Description: RVT_N Location: 69-312 bp Feature: domain Description: RVT_N Location: 69-312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357-561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357-561 bp Feature: gene Location: 750-959 bp Feature: gene Location: 1023-1214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJSX010000095.1 (20544 bp)
Overview 1 RT 1: 16148-20159 bp Neighborhood of RT #1 [16148, 20188] YgbK OmpR RVT_N RVT-GII GIIM HNH Feature: gene Location: 16148-17464 bp Feature: domain Description: YgbK Location: 16160-17453 bp Feature: domain Description: YgbK Location: 16160-17453 bp Feature: gene Location: 17473-18234 bp Feature: domain Description: OmpR Location: 17482-18163 bp Feature: domain Description: OmpR Location: 17482-18163 bp Feature: gene Location: 18419-20188 bp Feature: domain Description: RVT_N Location: 18488-18731 bp Feature: domain Description: RVT_N Location: 18488-18731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18776-19448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18776-19448 bp Feature: domain Description: GIIM Note: maturase Location: 19553-19760 bp Feature: domain Description: GIIM Note: maturase Location: 19553-19760 bp Feature: domain Description: HNH Note: nucleases Location: 20024-20159 bp Feature: domain Description: HNH Note: nucleases Location: 20024-20159 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YgbK (COG3395), OmpR (COG0745), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)