myRT

myRT report for GCA_014698505.1_ASM1469850v1

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Seq: JACJTD010000004.1 (299088 bp)
Overview 1 RT 1: 251862-259234 bp Neighborhood of RT #1 [251862, 259236] MltA DUF938 RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII McrA DUF938 MopI Feature: gene Location: 251862-253124 bp Feature: domain Description: MltA Location: 252045-253119 bp Feature: domain Description: MltA Location: 252045-2531 1 9 bp Feature: gene Location: 253277-253732 bp Feature: domain Description: DUF938 Location: 253298-253718 bp Feature: domain Description: DUF938 Location: 253298-25371 8 bp Feature: gene Location: 253838-255799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254249-255044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254249-255044 bp Feature: domain Description: Intron_maturas2 Location: 255146-255383 bp Feature: domain Description: Intron_maturas2 Location: 2551 46-255383 bp Feature: domain Description: HNHc Note: nucleases Location: 255542-255731 bp Feature: domain Description: HNHc Note: nucleases Location: 255542-255731 bp Feature: gene Location: 256213-257784 bp Feature: domain Description: RVT_N Location: 256249-256489 bp Feature: domain Description: RVT_N Location: 256249-256489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256546-257200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256546-257200 bp Feature: domain Description: McrA Location: 257431-257761 bp Feature: domain Description: McrA Location: 257431 -257761 bp Feature: gene Location: 258328-258570 bp Feature: domain Description: DUF938 Location: 258346-258556 bp Feature: domain Description: DUF938 Location: 258346-258556 bp Feature: gene Location: 258790-259236 bp Feature: domain Description: MopI Location: 259033-259234 bp Feature: domain Description: MopI Location: 259033-259234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MltA (smart00925), DUF938 (pfam06080), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RVT_N (pfam13655), McrA (COG4058), MopI (COG3585)

Seq: JACJTD010000029.1 (95217 bp)
Overview 1 RT 1: 15497-19097 bp Neighborhood of RT #1 [15497, 19120] YddW RVT-DGRs Avd_like Avd_like Feature: gene Location: 15497-16762 bp Feature: domain Description: YddW Location: 15584-16757 bp Feature: domain Description: YddW Location: 15584-16757 bp Feature: gene Location: 16982-17437 bp Feature: gene Location: 17509-18549 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17719-18361 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17719-18361 bp Feature: gene Location: 18763-18933 bp Feature: domain Description: Avd_like Location: 18769-18901 bp Feature: domain Description: Avd_like Location: 18769-18901 bp Feature: gene Location: 18959-19120 bp Feature: domain Description: Avd_like Location: 18977-19097 bp Feature: domain Description: Avd_like Location: 18977-19097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YddW (COG1649), RVT-DGRs, Avd_like (cd16376)

Seq: JACJTD010000052.1 (48228 bp)
Overview 1 RT 1: 33964-39631 bp Neighborhood of RT #1 [33964, 39631] MASE1 CitA TMAO_torS RVT_N RVT-GII GIIM HNHc Feature: gene Location: 33964-36603 bp Feature: domain Description: MASE1 Location: 33973-34951 bp Feature: domain Description: MASE1 Location: 3 3 973 -3 4951 bp Feature: domain Description: CitA Location: 35101-35257 bp Feature: domain Description: CitA Location: 3 5101-3 5257 bp Feature: domain Description: TMAO_torS Location: 35458-36592 bp Feature: domain Description: TMAO_torS Location: 3 5458-3 6592 bp Feature: gene Location: 36692-36850 bp Feature: gene Location: 36881-38572 bp Feature: domain Description: RVT_N Location: 36914-37160 bp Feature: domain Description: RVT_N Location: 3 6914-3 7160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37202-37880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7202-3 7880 bp Feature: domain Description: GIIM Note: maturase Location: 37979-38213 bp Feature: domain Description: GIIM Note: maturase Location: 3 7979-3 8213 bp Feature: domain Description: HNHc Note: nucleases Location: 38399-38540 bp Feature: domain Description: HNHc Note: nucleases Location: 3 83 99-3 8540 bp Feature: gene Location: 39176-39484 bp Feature: gene Location: 39494-39631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MASE1 (pfam05231), CitA (COG3290), TMAO_torS (TIGR02956), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJTD010000098.1 (17414 bp)
Overview 1 RT 1: 5441-11770 bp Neighborhood of RT #1 [5441, 12078] DUF3140 cas1_CYANO RVT_N RVT-GII KOG4768 McrA FhaB Feature: gene Location: 5441-5752 bp Feature: domain Description: DUF3140 Location: 5444-5693 bp Feature: domain Description: DUF314 0 Location: 54 4 4 -5693 bp Feature: gene Location: 5760-6812 bp Feature: domain Description: cas1_CYANO Location: 5847-6798 bp Feature: domain Description: cas1_CYANO Location: 584 7-6798 bp Feature: gene Location: 7721-9235 bp Feature: domain Description: RVT_N Location: 7757-7997 bp Feature: domain Description: RVT_N Location: 7757-7997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8054-8483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8054 -84 83 bp Feature: domain Description: KOG4768 Location: 8483-8738 bp Feature: domain Description: KOG4 768 Location: 84 83-8738 bp Feature: domain Description: McrA Location: 8903-9203 bp Feature: domain Description: McrA Location: 8903-9203 bp Feature: gene Location: 10905-11387 bp Feature: gene Location: 11488-12078 bp Feature: domain Description: FhaB Location: 11566-11770 bp Feature: domain Description: FhaB Location: 11566-11770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3140 (pfam11338), cas1_CYANO (TIGR04093), RVT_N (pfam13655), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), McrA (COG4058), FhaB (COG3210)

Seq: JACJTD010000047.1 (51762 bp)
Overview 1 RT 1: 32182-38706 bp Neighborhood of RT #1 [32182, 38708] RVT_N RVT-GII McrA DUF3854 PriA PriA DarT Feature: gene Location: 32182-32541 bp Feature: gene Location: 32776-32973 bp Feature: gene Location: 33091-34671 bp Feature: domain Description: RVT_N Location: 33127-33367 bp Feature: domain Description: RVT_N Location: 33127-33367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33424-34087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33424-34087 bp Feature: domain Description: McrA Location: 34318-34648 bp Feature: domain Description: McrA Location: 34318-34648 bp Feature: gene Location: 34799-37693 bp Feature: domain Description: DUF3854 Location: 34865-35246 bp Feature: domain Description: DUF385 4 Location: 34865 -35 246 bp Feature: domain Description: PriA Location: 35375-35531 bp Feature: domain Description: PriA Location: 35 375 -35 5 31 bp Feature: domain Description: PriA Location: 35999-36110 bp Feature: domain Description: PriA Location: 35 999-36110 bp Feature: gene Location: 38079-38708 bp Feature: domain Description: DarT Location: 38097-38706 bp Feature: domain Description: DarT Location: 38097-38706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), DUF3854 (pfam12965), PriA (COG1198), DarT

Seq: JACJTD010000003.1 (386319 bp)
Overview 1 RT 1: 371660-375635 bp Neighborhood of RT #1 [371660, 375646] Uma2 HicB RVT-UG13 Acetyltransf_10 COG4453 Feature: gene Location: 371660-372277 bp Feature: domain Description: Uma2 Location: 371696-372200 bp Feature: domain Description: Uma2 Location: 3716 96 -372200 bp Feature: gene Location: 372318-372548 bp Feature: domain Description: HicB Location: 372330-372519 bp Feature: domain Description: HicB Location: 372330-372519 bp Feature: gene Location: 372831-374399 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 373257-373719 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 373257-373719 bp Feature: gene Location: 374851-375372 bp Feature: domain Description: Acetyltransf_10 Location: 375136-375316 bp Feature: domain Description: Acetyltransf_10 Location: 375136 -375316 bp Feature: gene Location: 375362-375646 bp Feature: domain Description: COG4453 Location: 375374-375635 bp Feature: domain Description: COG4453 Location: 375374-3756 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), HicB (pfam05534), RVT-UG13, Acetyltransf_10 (pfam13673), COG4453 (Uncharacterized conserved protein, DUF1778 family )

Seq: JACJTD010000115.1 (11095 bp)
Overview 1 RT 1: 8351-10775 bp Neighborhood of RT #1 [8351, 10792] RVT_N RVT-GII RVT-GII McrA Feature: gene Location: 8351-8503 bp Feature: gene Location: 8819-9079 bp Feature: gene Location: 9275-10792 bp Feature: domain Description: RVT_N Location: 9311-9551 bp Feature: domain Description: RVT_N Location: 9311-9551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9608-10037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9608-10037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10040-10205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10040-10205 bp Feature: domain Description: McrA Location: 10439-10775 bp Feature: domain Description: McrA Location: 10439-107 7 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058)