myRT

myRT report for GCA_014698675.1_ASM1469867v1

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Seq: JACJTL010000227.1 (2627 bp)
Overview 1 RT 1: 105-2474 bp Neighborhood of RT #1 [105, 2474] RVT-GII GIIM McrA RVT-GII RVT_N Feature: gene Location: 105-1277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111-537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 -537 bp Feature: domain Description: GIIM Note: maturase Location: 642-843 bp Feature: domain Description: GIIM Note: maturase Location: 642-843 bp Feature: domain Description: McrA Location: 1005-1251 bp Feature: domain Description: McrA Location: 1 005-1 251 bp Feature: gene Location: 1267-1497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1273-1480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 273-1 480 bp Feature: gene Location: 1700-1924 bp Feature: domain Description: RVT_N Location: 1769-1919 bp Feature: domain Description: RVT_N Location: 1 769-1 91 9 bp Feature: gene Location: 2208-2474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655)

Seq: JACJTL010000200.1 (3659 bp)
Overview 1 RT 1: 1742-3475 bp Neighborhood of RT #1 [1742, 3475] RVT-GII GIIM Feature: gene Location: 1742-2170 bp Feature: gene Location: 2243-2389 bp Feature: gene Location: 2491-3228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2497-2923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 497-2 92 3 bp Feature: domain Description: GIIM Note: maturase Location: 3058-3223 bp Feature: domain Description: GIIM Note: maturase Location: 3058-32 2 3 bp Feature: gene Location: 3248-3475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACJTL010000016.1 (72101 bp)
Overview 1 RT 1: 35125-40012 bp Neighborhood of RT #1 [35125, 40035] DUF1815 DUF2839 RVT_N RVT-GII GIIM NagA COG3744 Feature: gene Location: 35125-35469 bp Feature: domain Description: DUF1815 Location: 35131-35422 bp Feature: domain Description: DUF1815 Location: 3 513 1-3 5422 bp Feature: gene Location: 35889-36068 bp Feature: domain Description: DUF2839 Location: 35916-36057 bp Feature: domain Description: DUF283 9 Location: 3 5916-3 6057 bp Feature: gene Location: 36170-37663 bp Feature: domain Description: RVT_N Location: 36215-36461 bp Feature: domain Description: RVT_N Location: 3 6215-3 6461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36545-37169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6545-3 7169 bp Feature: domain Description: GIIM Note: maturase Location: 37268-37502 bp Feature: domain Description: GIIM Note: maturase Location: 3 7268-3 7502 bp Feature: gene Location: 38412-39578 bp Feature: domain Description: NagA Location: 38493-39483 bp Feature: domain Description: NagA Location: 3 8493 -3 9483 bp Feature: gene Location: 39634-40035 bp Feature: domain Description: COG3744 Location: 39643-40012 bp Feature: domain Description: COG3 744 Location: 3 9643 -40012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1815 (pfam08844), DUF2839 (pfam10999), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), NagA (COG1820), COG3744 (PIN domain nuclease, a component of toxin-antitoxin system (PIN domain) )

Seq: JACJTL010000241.1 (2431 bp)
Overview 1 RT 1: 885-2204 bp Neighborhood of RT #1 [885, 2230] RVT_N RVT-GII Feature: gene Location: 885-1016 bp Feature: gene Location: 1079-1207 bp Feature: gene Location: 1634-2230 bp Feature: domain Description: RVT_N Location: 1703-1946 bp Feature: domain Description: RVT_N Location: 1703-194 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1991-2204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1991-2204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJTL010000208.1 (3439 bp)
Overview 1 RT 1: 132-2752 bp Neighborhood of RT #1 [132, 2752] RVT-GII GIIM HNH RVT_N RVT-GII Feature: gene Location: 132-260 bp Feature: gene Location: 390-1583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396-822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396-822 bp Feature: domain Description: GIIM Note: maturase Location: 927-1155 bp Feature: domain Description: GIIM Note: maturase Location: 927-115 5 bp Feature: domain Description: HNH Note: nucleases Location: 1398-1533 bp Feature: domain Description: HNH Note: nucleases Location: 1398-15 33 bp Feature: gene Location: 1573-1983 bp Feature: domain Description: RVT_N Location: 1612-1693 bp Feature: domain Description: RVT_N Location: 1612-1693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1738-1966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1738-1966 bp Feature: gene Location: 2184-2381 bp Feature: gene Location: 2600-2752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844), RVT_N (pfam13655)

Seq: JACJTL010000080.1 (24938 bp)
Overview 1 RT 1: 11999-15999 bp Neighborhood of RT #1 [11999, 16451] PRK07459 RVT_N RVT-GII GIIM NAD_bind_1_Glu_DH Lys9 Feature: gene Location: 11999-12532 bp Feature: gene Location: 12631-12906 bp Feature: domain Description: PRK07459 Location: 12634-12883 bp Feature: domain Description: PRK07459 Location: 126 34-12883 bp Feature: gene Location: 13166-14662 bp Feature: domain Description: RVT_N Location: 13196-13442 bp Feature: domain Description: RVT_N Location: 13196 -13442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13484-14144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13484-14144 bp Feature: domain Description: GIIM Note: maturase Location: 14246-14483 bp Feature: domain Description: GIIM Note: maturase Location: 14246 -14483 bp Feature: gene Location: 14743-14958 bp Feature: gene Location: 15432-16451 bp Feature: domain Description: NAD_bind_1_Glu_DH Location: 15489-15684 bp Feature: domain Description: NAD_bind_1_Glu_DH Location: 15489-156 84 bp Feature: domain Description: Lys9 Location: 15717-15999 bp Feature: domain Description: Lys9 Location: 15717-15999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07459 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), NAD_bind_1_Glu_DH (cd01076), Lys9 (COG1748)

Seq: JACJTL010000279.1 (1793 bp)
Overview 1 RT 1: 369-1577 bp Neighborhood of RT #1 [369, 1603] RVT_N RVT-GII Feature: gene Location: 369-602 bp Feature: gene Location: 1006-1419 bp Feature: domain Description: RVT_N Location: 1075-1318 bp Feature: domain Description: RVT_N Location: 107 5-1318 bp Feature: gene Location: 1379-1603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1385-1577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1385-157 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJTL010000301.1 (1587 bp)
Overview 1 RT 1: 2-1556 bp Neighborhood of RT #1 [2, 1585] RVT-GII GIIM HNH Feature: gene Location: 2-157 bp Feature: gene Location: 419-1585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425-845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425-8 45 bp Feature: domain Description: GIIM Note: maturase Location: 950-1160 bp Feature: domain Description: GIIM Note: maturase Location: 950-1160 bp Feature: domain Description: HNH Note: nucleases Location: 1421-1556 bp Feature: domain Description: HNH Note: nucleases Location: 1421-1556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JACJTL010000007.1 (93786 bp)
Overview 1 RT 1: 230-3388 bp Neighborhood of RT #1 [230, 5202] RVT-GII HsdM Feature: gene Location: 230-808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 236-806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 236-806 bp Feature: gene Location: 1516-1740 bp Feature: gene Location: 2041-5202 bp Feature: domain Description: HsdM Location: 3037-3388 bp Feature: domain Description: HsdM Location: 3037-3388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HsdM (COG0286)

Seq: JACJTL010000189.1 (4625 bp)
Overview 1 RT 1: 3533-4499 bp Neighborhood of RT #1 [3533, 4525] RVT_N RVT_N RVT-GII Feature: gene Location: 3533-3673 bp Feature: gene Location: 3893-4099 bp Feature: domain Description: RVT_N Location: 3944-4094 bp Feature: domain Description: RVT_N Location: 3944-4094 bp Feature: gene Location: 4121-4525 bp Feature: domain Description: RVT_N Location: 4160-4241 bp Feature: domain Description: RVT_N Location: 4160-4241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4286-4499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4286-4499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJTL010000138.1 (10741 bp)
Overview 1 RT 1: 74-2134 bp Neighborhood of RT #1 [74, 2265] RVT_N RVT-GII Peptidase_C39_2 Feature: gene Location: 74-697 bp Feature: domain Description: RVT_N Location: 143-386 bp Feature: domain Description: RVT_N Location: 143-386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-653 bp Feature: gene Location: 982-1203 bp Feature: gene Location: 1303-2265 bp Feature: domain Description: Peptidase_C39_2 Location: 1753-2134 bp Feature: domain Description: Peptidase_C39_2 Location: 1753-2134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Peptidase_C39_2 (pfam13529)

Seq: JACJTL010000119.1 (13293 bp)
Overview 1 RT 1: 306-2687 bp 2 RT 2: 7983-13051 bp Neighborhood of RT #1 [306, 2698] RVT-GII GIIM HNH PRK02603 GatC Neighborhood of RT #2 [7983, 13104] chaperone_ClpB RVT-GII GIIM HNHc COG3415 DDE_3 Feature: gene Location: 306-1643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309-906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309-906 bp Feature: domain Description: GIIM Note: maturase Location: 1014-1215 bp Feature: domain Description: GIIM Note: maturase Location: 1014-12 15 bp Feature: domain Description: HNH Note: nucleases Location: 1479-1614 bp Feature: domain Description: HNH Note: nucleases Location: 1479-1614 bp Feature: gene Location: 1863-2384 bp Feature: domain Description: PRK02603 Location: 1866-2379 bp Feature: domain Description: PRK02603 Location: 1866-2379 bp Feature: gene Location: 2405-2698 bp Feature: domain Description: GatC Location: 2408-2687 bp Feature: domain Description: GatC Location: 2408-2687 bp Feature: gene Location: 7983-10601 bp Feature: domain Description: chaperone_ClpB Location: 8010-10563 bp Feature: domain Description: chaperone_ClpB Location: 8010-10563 bp Feature: gene Location: 10754-10930 bp Feature: gene Location: 11080-12249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11086-11515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11086-11515 bp Feature: domain Description: GIIM Note: maturase Location: 11614-11845 bp Feature: domain Description: GIIM Note: maturase Location: 11614-11845 bp Feature: domain Description: HNHc Note: nucleases Location: 12058-12199 bp Feature: domain Description: HNHc Note: nucleases Location: 12 058-12 199 bp Feature: gene Location: 12529-13104 bp Feature: domain Description: COG3415 Location: 12532-12847 bp Feature: domain Description: COG3415 Location: 12 532-12 847 bp Feature: domain Description: DDE_3 Location: 12883-13051 bp Feature: domain Description: DDE_3 Location: 12 883-13051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844), PRK02603 (photosystem I assembly protein Ycf3; Provisional), GatC (COG0721), chaperone_ClpB (TIGR03346), HNHc (smart00507), COG3415 (Transposase ), DDE_3 (pfam13358)

Seq: JACJTL010000195.1 (4088 bp)
Overview 1 RT 1: 3-2995 bp Neighborhood of RT #1 [3, 2997] GIIM HNH RVT_N RVT-GII GIIM HNHc RbcS Feature: gene Location: 3-752 bp Feature: domain Description: GIIM Note: maturase Location: 102-309 bp Feature: domain Description: GIIM Note: maturase Location: 102-309 bp Feature: domain Description: HNH Note: nucleases Location: 567-702 bp Feature: domain Description: HNH Note: nucleases Location: 567-702 bp Feature: gene Location: 1008-1421 bp Feature: domain Description: RVT_N Location: 1077-1320 bp Feature: domain Description: RVT_N Location: 1077-13 20 bp Feature: gene Location: 1312-1932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1384-1924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 84-1924 bp Feature: gene Location: 2155-2793 bp Feature: domain Description: GIIM Note: maturase Location: 2161-2368 bp Feature: domain Description: GIIM Note: maturase Location: 2161-2368 bp Feature: domain Description: HNHc Note: nucleases Location: 2587-2725 bp Feature: domain Description: HNHc Note: nucleases Location: 2587-2725 bp Feature: gene Location: 2806-2997 bp Feature: domain Description: RbcS Location: 2881-2995 bp Feature: domain Description: RbcS Location: 2881-2995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNH (pfam01844), RVT_N (pfam13655), RVT-GII, HNHc (smart00507), RbcS (pfam12338)

Seq: JACJTL010000032.1 (48866 bp)
Overview 1 RT 1: 46589-48713 bp Neighborhood of RT #1 [46589, 48865] RVT_N RVT-GII RVT-GII Feature: gene Location: 46589-46738 bp Feature: gene Location: 47633-47857 bp Feature: domain Description: RVT_N Location: 47702-47852 bp Feature: domain Description: RVT_N Location: 47702-47852 bp Feature: gene Location: 48061-48291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48067-48274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48067-48274 bp Feature: gene Location: 48281-48865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48287-48713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48287-48713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJTL010000084.1 (23119 bp)
Overview 1 RT 1: 119-5438 bp Neighborhood of RT #1 [119, 5449] RVT_N RVT-GII GIIM HNH OmpR YgbK Feature: gene Location: 119-283 bp Feature: gene Location: 1409-3178 bp Feature: domain Description: RVT_N Location: 1478-1721 bp Feature: domain Description: RVT_N Location: 1478-1721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1766-2438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1766-2438 bp Feature: domain Description: GIIM Note: maturase Location: 2543-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2543-2750 bp Feature: domain Description: HNH Note: nucleases Location: 3014-3149 bp Feature: domain Description: HNH Note: nucleases Location: 3014-3149 bp Feature: gene Location: 3363-4124 bp Feature: domain Description: OmpR Location: 3372-4053 bp Feature: domain Description: OmpR Location: 3372-4053 bp Feature: gene Location: 4133-5449 bp Feature: domain Description: YgbK Location: 4145-5438 bp Feature: domain Description: YgbK Location: 4145-5438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), OmpR (COG0745), YgbK (COG3395)

Seq: JACJTL010000236.1 (2475 bp)
Overview 1 RT 1: 79-1838 bp Neighborhood of RT #1 [79, 1855] RVT-GII GIIM HNHc RVT_N RVT-GII Feature: gene Location: 79-1299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115-547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115-547 bp Feature: domain Description: GIIM Note: maturase Location: 646-874 bp Feature: domain Description: GIIM Note: maturase Location: 646-874 bp Feature: domain Description: HNHc Note: nucleases Location: 1090-1231 bp Feature: domain Description: HNHc Note: nucleases Location: 1090-1231 bp Feature: gene Location: 1253-1855 bp Feature: domain Description: RVT_N Location: 1322-1565 bp Feature: domain Description: RVT_N Location: 1322-1565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1610-1838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 10-1838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655)

Seq: JACJTL010000298.1 (1597 bp)
Overview 1 RT 1: 105-1579 bp Neighborhood of RT #1 [105, 1596] RVT-GII GIIM HNH RVT-GII Feature: gene Location: 105-1274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111-540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111-540 bp Feature: domain Description: GIIM Note: maturase Location: 639-846 bp Feature: domain Description: GIIM Note: maturase Location: 639-846 bp Feature: domain Description: HNH Note: nucleases Location: 1110-1245 bp Feature: domain Description: HNH Note: nucleases Location: 1110-1245 bp Feature: gene Location: 1264-1596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1372-1579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1372-1579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JACJTL010000238.1 (2469 bp)
Overview 1 RT 1: 2-2418 bp Neighborhood of RT #1 [2, 2447] COG3415 RVT-GII GIIM HNH Feature: gene Location: 2-787 bp Feature: gene Location: 790-1179 bp Feature: domain Description: COG3415 Location: 799-1162 bp Feature: domain Description: COG3415 Location: 799-1162 bp Feature: gene Location: 1278-2447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1284-1713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1284-1713 bp Feature: domain Description: GIIM Note: maturase Location: 1812-2019 bp Feature: domain Description: GIIM Note: maturase Location: 18 12-2019 bp Feature: domain Description: HNH Note: nucleases Location: 2283-2418 bp Feature: domain Description: HNH Note: nucleases Location: 2283-2418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JACJTL010000225.1 (2734 bp)
Overview 1 RT 1: 2-1240 bp Neighborhood of RT #1 [2, 1240] RVT_N RVT-GII Feature: gene Location: 2-589 bp Feature: domain Description: RVT_N Location: 68-311 bp Feature: domain Description: RVT_N Location: 68-311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356-569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356-569 bp Feature: gene Location: 776-985 bp Feature: gene Location: 1049-1240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJTL010000255.1 (2150 bp)
Overview 1 RT 1: 12-2029 bp Neighborhood of RT #1 [12, 2029] RVT-GII GIIM McrA Feature: gene Location: 12-1508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18-666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18-666 bp Feature: domain Description: GIIM Note: maturase Location: 771-978 bp Feature: domain Description: GIIM Note: maturase Location: 771-978 bp Feature: domain Description: McrA Location: 1107-1398 bp Feature: domain Description: McrA Location: 1107-1398 bp Feature: gene Location: 1688-2029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJTL010000270.1 (1991 bp)
Overview 1 RT 1: 307-1989 bp Neighborhood of RT #1 [307, 1989] RVT-GII GIIM HNHc Feature: gene Location: 307-525 bp Feature: gene Location: 755-1735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 767-992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 767-992 bp Feature: domain Description: GIIM Note: maturase Location: 1097-1331 bp Feature: domain Description: GIIM Note: maturase Location: 1097-1331 bp Feature: domain Description: HNHc Note: nucleases Location: 1544-1685 bp Feature: domain Description: HNHc Note: nucleases Location: 1544-1685 bp Feature: gene Location: 1858-1989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJTL010000009.1 (83358 bp)
Overview 1 RT 1: 75643-83357 bp Neighborhood of RT #1 [75643, 83357] PRK11107 GAF_2 BaeS PRK11107 AcyC RVT-GII GIIM HNH RVT_N Feature: gene Location: 75643-79212 bp Feature: domain Description: PRK11107 Location: 75649-76108 bp Feature: domain Description: PRK11107 Location: 75649-76108 bp Feature: domain Description: GAF_2 Location: 76417-76600 bp Feature: domain Description: GAF_2 Location: 76417-76600 bp Feature: domain Description: BaeS Location: 77116-77947 bp Feature: domain Description: BaeS Location: 77116-77947 bp Feature: domain Description: PRK11107 Location: 78136-78514 bp Feature: domain Description: PRK11107 Location: 78136-78514 bp Feature: domain Description: AcyC Location: 78532-79189 bp Feature: domain Description: AcyC Location: 78532-79189 bp Feature: gene Location: 79591-80556 bp Feature: gene Location: 80653-82044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80659-81307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80659-81307 bp Feature: domain Description: GIIM Note: maturase Location: 81418-81631 bp Feature: domain Description: GIIM Note: maturase Location: 81418-81631 bp Feature: domain Description: HNH Note: nucleases Location: 81880-82015 bp Feature: domain Description: HNH Note: nucleases Location: 81880-82015 bp Feature: gene Location: 82248-82472 bp Feature: domain Description: RVT_N Location: 82317-82467 bp Feature: domain Description: RVT_N Location: 82317-82467 bp Feature: gene Location: 83223-83357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11107 (hybrid sensory histidine kinase BarA; Provisional), GAF_2 (pfam13185), BaeS (COG0642), AcyC (COG2114), RVT-GII, GIIM (pfam08388), HNH (pfam01844), RVT_N (pfam13655)

Seq: JACJTL010000117.1 (13797 bp)
Overview 1 RT 1: 10576-13781 bp Neighborhood of RT #1 [10576, 13781] SH3_3 SH3_3 pheS RVT-GII GIIM HNHc Feature: gene Location: 10576-11232 bp Feature: domain Description: SH3_3 Location: 10765-10930 bp Feature: domain Description: SH3_3 Location: 10765-10930 bp Feature: domain Description: SH3_3 Location: 11044-11218 bp Feature: domain Description: SH3_3 Location: 11044-11218 bp Feature: gene Location: 11244-12245 bp Feature: domain Description: pheS Location: 11274-12243 bp Feature: domain Description: pheS Location: 11274-12243 bp Feature: gene Location: 12339-13451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12345-12693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123 45-12693 bp Feature: domain Description: GIIM Note: maturase Location: 12798-13008 bp Feature: domain Description: GIIM Note: maturase Location: 12798-13008 bp Feature: domain Description: HNHc Note: nucleases Location: 13242-13383 bp Feature: domain Description: HNHc Note: nucleases Location: 13242-13383 bp Feature: gene Location: 13524-13781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SH3_3 (pfam08239), pheS (TIGR00468), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJTL010000265.1 (2024 bp)
Overview 1 RT 1: 932-2015 bp Neighborhood of RT #1 [932, 2023] RVT_N RVT-GII DDE_3 Feature: gene Location: 932-1510 bp Feature: domain Description: RVT_N Location: 1001-1244 bp Feature: domain Description: RVT_N Location: 1001-124 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1289-1487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1289-1487 bp Feature: gene Location: 1562-2023 bp Feature: domain Description: DDE_3 Location: 1619-2015 bp Feature: domain Description: DDE_3 Location: 1619-2015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, DDE_3 (pfam13358)

Seq: JACJTL010000284.1 (1739 bp)
Overview 1 RT 1: 1-1370 bp Neighborhood of RT #1 [1, 1387] RVT-GII GIIM McrA RVT-GII Feature: gene Location: 1-1086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-352 bp Feature: domain Description: GIIM Note: maturase Location: 439-652 bp Feature: domain Description: GIIM Note: maturase Location: 439-652 bp Feature: domain Description: McrA Location: 784-1063 bp Feature: domain Description: McrA Location: 784-1063 bp Feature: gene Location: 1157-1387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1163-1370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1163-1370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJTL010000176.1 (5883 bp)
Overview 1 RT 1: 1458-5815 bp Neighborhood of RT #1 [1458, 5880] HTH_Tnp_IS630 DDE_3 RVT_N RVT-GII GIIM HTH_33 Feature: gene Location: 1458-2162 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1542-1902 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1542-1902 bp Feature: domain Description: DDE_3 Location: 1944-2151 bp Feature: domain Description: DDE_3 Location: 1944-2151 bp Feature: gene Location: 2896-3309 bp Feature: domain Description: RVT_N Location: 2965-3208 bp Feature: domain Description: RVT_N Location: 2965-3208 bp Feature: gene Location: 3489-4331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3495-3921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3495-3921 bp Feature: domain Description: GIIM Note: maturase Location: 4026-4248 bp Feature: domain Description: GIIM Note: maturase Location: 4026 -4248 bp Feature: gene Location: 4877-5032 bp Feature: gene Location: 5683-5880 bp Feature: domain Description: HTH_33 Location: 5692-5815 bp Feature: domain Description: HTH_33 Location: 5692-5815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_IS630 (pfam01710), DDE_3 (pfam13358), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_33 (pfam13592)

Seq: JACJTL010000087.1 (21523 bp)
Overview 1 RT 1: 19340-20811 bp Neighborhood of RT #1 [19340, 20837] RVT_N RVT-GII Feature: gene Location: 19340-19504 bp Feature: gene Location: 20240-20653 bp Feature: domain Description: RVT_N Location: 20309-20552 bp Feature: domain Description: RVT_N Location: 20309-20552 bp Feature: gene Location: 20613-20837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20619-20811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20619-20811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJTL010000092.1 (20855 bp)
Overview 1 RT 1: 319-3893 bp Neighborhood of RT #1 [319, 3893] RVT-GII RVT-GII GIIM McrA FolB Feature: gene Location: 319-450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325-448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325-448 bp Feature: gene Location: 574-1509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 580-751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 580-751 bp Feature: domain Description: GIIM Note: maturase Location: 856-1078 bp Feature: domain Description: GIIM Note: maturase Location: 856-1078 bp Feature: domain Description: McrA Location: 1207-1483 bp Feature: domain Description: McrA Location: 1207-1483 bp Feature: gene Location: 2398-2793 bp Feature: domain Description: FolB Location: 2443-2788 bp Feature: domain Description: FolB Location: 2443-2788 bp Feature: gene Location: 3072-3893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), FolB (smart00905)

Seq: JACJTL010000006.1 (97589 bp)
Overview 1 RT 1: 95234-97443 bp Neighborhood of RT #1 [95234, 97493] petB RVT-GII GIIM HNHc Feature: gene Location: 95234-95902 bp Feature: domain Description: petB Location: 95261-95900 bp Feature: domain Description: petB Location: 95261-95900 bp Feature: gene Location: 96064-96240 bp Feature: gene Location: 96264-97493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96285-96735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96285-96735 bp Feature: domain Description: GIIM Note: maturase Location: 96840-97047 bp Feature: domain Description: GIIM Note: maturase Location: 96840-97047 bp Feature: domain Description: HNHc Note: nucleases Location: 97296-97443 bp Feature: domain Description: HNHc Note: nucleases Location: 9729 6-97443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT petB (CHL00070), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJTL010000137.1 (10833 bp)
Overview 1 RT 1: 2-2565 bp Neighborhood of RT #1 [2, 2565] RVT-GII GIIM McrA Feature: gene Location: 2-139 bp Feature: gene Location: 243-1757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 318-969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 318-969 bp Feature: domain Description: GIIM Note: maturase Location: 1104-1323 bp Feature: domain Description: GIIM Note: maturase Location: 1104-1323 bp Feature: domain Description: McrA Location: 1461-1731 bp Feature: domain Description: McrA Location: 1461-1731 bp Feature: gene Location: 1977-2219 bp Feature: gene Location: 2422-2565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJTL010000022.1 (67477 bp)
Overview 1 RT 1: 63775-67470 bp Neighborhood of RT #1 [63775, 67475] STKc_PknB_like WD40 KOG0266 RVT_N RVT-GII Feature: gene Location: 63775-65796 bp Feature: domain Description: STKc_PknB_like Location: 63874-64663 bp Feature: domain Description: STKc_PknB_like Location: 63874-64663 bp Feature: domain Description: WD40 Location: 64885-65410 bp Feature: domain Description: WD40 Location: 64885-65410 bp Feature: domain Description: KOG0266 Location: 65446-65788 bp Feature: domain Description: KOG0266 Location: 65446-65788 bp Feature: gene Location: 66031-66267 bp Feature: gene Location: 66552-67475 bp Feature: domain Description: RVT_N Location: 66621-66864 bp Feature: domain Description: RVT_N Location: 66621-66864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66909-67470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66909-67470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), WD40 (smart00320), KOG0266 (KOG0266, WD40 repeat-containing protein ), RVT_N (pfam13655), RVT-GII

Seq: JACJTL010000116.1 (14027 bp)
Overview 1 RT 1: 2891-6634 bp 2 RT 2: 12549-13811 bp Neighborhood of RT #1 [2891, 6634] DDE_3 RVT_N RVT_N RVT-GII GIIM McrA DDE_3 Neighborhood of RT #2 [12549, 13837] RVT_N RVT-GII Feature: gene Location: 2891-3229 bp Feature: domain Description: DDE_3 Location: 3053-3197 bp Feature: domain Description: DDE_3 Location: 3053-3197 bp Feature: gene Location: 3877-4101 bp Feature: domain Description: RVT_N Location: 3946-4096 bp Feature: domain Description: RVT_N Location: 3946-4096 bp Feature: gene Location: 4123-5700 bp Feature: domain Description: RVT_N Location: 4162-4243 bp Feature: domain Description: RVT_N Location: 4162-4243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4288-4957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4288-4957 bp Feature: domain Description: GIIM Note: maturase Location: 5062-5269 bp Feature: domain Description: GIIM Note: maturase Location: 5062-5269 bp Feature: domain Description: McrA Location: 5425-5674 bp Feature: domain Description: McrA Location: 5425-5674 bp Feature: gene Location: 5834-6034 bp Feature: domain Description: DDE_3 Location: 5840-5954 bp Feature: domain Description: DDE_3 Location: 5840-5954 bp Feature: gene Location: 6428-6634 bp Feature: gene Location: 12549-12803 bp Feature: gene Location: 13189-13410 bp Feature: domain Description: RVT_N Location: 13255-13405 bp Feature: domain Description: RVT_N Location: 132 55-13405 bp Feature: gene Location: 13541-13837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13619-13811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13619-13811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJTL010000248.1 (2226 bp)
Overview 1 RT 1: 2-1757 bp Neighborhood of RT #1 [2, 1757] RVT-GII RVT-GII RVT_N Feature: gene Location: 2-589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-437 bp Feature: gene Location: 579-809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 585-792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 585-792 bp Feature: gene Location: 1012-1236 bp Feature: domain Description: RVT_N Location: 1081-1231 bp Feature: domain Description: RVT_N Location: 1081-1231 bp Feature: gene Location: 1521-1757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RVT_N (pfam13655)

Seq: JACJTL010000215.1 (3143 bp)
Overview 1 RT 1: 3-2959 bp Neighborhood of RT #1 [3, 2959] LipA RVT-GII GIIM Feature: gene Location: 3-140 bp Feature: gene Location: 518-1396 bp Feature: domain Description: LipA Location: 527-1367 bp Feature: domain Description: LipA Location: 527-1367 bp Feature: gene Location: 1987-2712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1993-2419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1993-2419 bp Feature: domain Description: GIIM Note: maturase Location: 2524-2707 bp Feature: domain Description: GIIM Note: maturase Location: 2524-2707 bp Feature: gene Location: 2732-2959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LipA (COG0320), RVT-GII, GIIM (pfam08388)

Seq: JACJTL010000061.1 (31626 bp)
Overview 1 RT 1: 19796-26853 bp Neighborhood of RT #1 [19796, 26960] RVT_N RVT-GII GIIM HNH COG4249 CelA Feature: gene Location: 19796-19936 bp Feature: gene Location: 20014-20259 bp Feature: gene Location: 20544-22313 bp Feature: domain Description: RVT_N Location: 20613-20856 bp Feature: domain Description: RVT_N Location: 20613-20856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20901-21573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20901-21573 bp Feature: domain Description: GIIM Note: maturase Location: 21678-21888 bp Feature: domain Description: GIIM Note: maturase Location: 21678-21888 bp Feature: domain Description: HNH Note: nucleases Location: 22149-22284 bp Feature: domain Description: HNH Note: nucleases Location: 22149-22284 bp Feature: gene Location: 22539-24410 bp Feature: domain Description: COG4249 Location: 22563-23376 bp Feature: domain Description: COG4249 Location: 22563-23376 bp Feature: gene Location: 24699-26960 bp Feature: domain Description: CelA Location: 24954-26853 bp Feature: domain Description: CelA Location: 24954-26853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG4249 (Uncharacterized protein, contains caspase domain ), CelA (TIGR03030)

Seq: JACJTL010000302.1 (1584 bp)
Overview 1 RT 1: 432-1582 bp Neighborhood of RT #1 [432, 1582] RVT-GII group_II_RT_mat Feature: gene Location: 432-1280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438-864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438-864 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 927-1188 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 927-1188 bp Feature: gene Location: 1430-1582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: JACJTL010000213.1 (3225 bp)
Overview 1 RT 1: 1307-2987 bp Neighborhood of RT #1 [1307, 3025] DNA_processg_A GIIM HNHc RVT-GII Feature: gene Location: 1307-1810 bp Feature: domain Description: DNA_processg_A Location: 1376-1622 bp Feature: domain Description: DNA_processg_A Location: 137 6-1622 bp Feature: gene Location: 1913-2557 bp Feature: domain Description: GIIM Note: maturase Location: 1919-2123 bp Feature: domain Description: GIIM Note: maturase Location: 1919-2123 bp Feature: domain Description: HNHc Note: nucleases Location: 2342-2501 bp Feature: domain Description: HNHc Note: nucleases Location: 2342-2501 bp Feature: gene Location: 2684-3025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2687-2987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2687-2987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA_processg_A (pfam02481), GIIM (pfam08388), HNHc (smart00507), RVT-GII

Seq: JACJTL010000065.1 (30080 bp)
Overview 1 RT 1: 184-4608 bp Neighborhood of RT #1 [184, 4619] RVT-GII GIIM HNHc MhpC GT4_PimA-like Feature: gene Location: 184-420 bp Feature: gene Location: 436-1626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442-868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442-868 bp Feature: domain Description: GIIM Note: maturase Location: 976-1195 bp Feature: domain Description: GIIM Note: maturase Location: 976-1195 bp Feature: domain Description: HNHc Note: nucleases Location: 1417-1576 bp Feature: domain Description: HNHc Note: nucleases Location: 1417-1576 bp Feature: gene Location: 1781-2659 bp Feature: domain Description: MhpC Location: 1814-2621 bp Feature: domain Description: MhpC Location: 1814-2621 bp Feature: gene Location: 3456-4619 bp Feature: domain Description: GT4_PimA-like Location: 3717-4608 bp Feature: domain Description: GT4_PimA-like Location: 3717-4608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), MhpC (COG0596), GT4_PimA-like (cd03801)

Seq: JACJTL010000115.1 (14143 bp)
Overview 1 RT 1: 1497-5871 bp Neighborhood of RT #1 [1497, 5894] RVT-GII GIIM HNH McrA MrcB Feature: gene Location: 1497-1625 bp Feature: gene Location: 1842-3305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1917-2568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1917-2568 bp Feature: domain Description: GIIM Note: maturase Location: 2682-2892 bp Feature: domain Description: GIIM Note: maturase Location: 2682-2892 bp Feature: domain Description: HNH Note: nucleases Location: 3141-3276 bp Feature: domain Description: HNH Note: nucleases Location: 3141-3276 bp Feature: gene Location: 3338-3799 bp Feature: domain Description: McrA Location: 3515-3773 bp Feature: domain Description: McrA Location: 3515-3773 bp Feature: gene Location: 3960-5894 bp Feature: domain Description: MrcB Location: 4068-5871 bp Feature: domain Description: MrcB Location: 4068-5871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844), McrA (COG4058), MrcB (COG0744)

Seq: JACJTL010000155.1 (7927 bp)
Overview 1 RT 1: 371-3346 bp Neighborhood of RT #1 [371, 3346] RVT-GII RVT-GII Feature: gene Location: 371-550 bp Feature: gene Location: 688-981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 760-955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 760-955 bp Feature: gene Location: 1258-1572 bp Feature: gene Location: 1592-1888 bp Feature: gene Location: 2044-2730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2116-2686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2116-2686 bp Feature: gene Location: 2892-3029 bp Feature: gene Location: 3083-3346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACJTL010000013.1 (80081 bp)
Overview 1 RT 1: 77566-80063 bp Neighborhood of RT #1 [77566, 80080] PIN_VapC4-5_FitB-like RVT-GII GIIM McrA RVT-GII Feature: gene Location: 77566-77973 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 77578-77935 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 77578-77935 bp Feature: gene Location: 78255-78512 bp Feature: gene Location: 78586-79758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78592-79018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78592-79018 bp Feature: domain Description: GIIM Note: maturase Location: 79123-79324 bp Feature: domain Description: GIIM Note: maturase Location: 79123-79324 bp Feature: domain Description: McrA Location: 79501-79732 bp Feature: domain Description: McrA Location: 79501-79732 bp Feature: gene Location: 79748-80080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79856-80063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79856-80063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_VapC4-5_FitB-like (cd18754), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJTL010000210.1 (3369 bp)
Overview 1 RT 1: 478-3090 bp Neighborhood of RT #1 [478, 3113] RVT_N RVT-GII RVT-GII GIIM McrA Feature: gene Location: 478-891 bp Feature: domain Description: RVT_N Location: 550-790 bp Feature: domain Description: RVT_N Location: 550-790 bp Feature: gene Location: 851-1075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 857-1049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 857-1049 bp Feature: gene Location: 1213-1623 bp Feature: gene Location: 1691-1918 bp Feature: gene Location: 1938-3113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1944-2373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1944-2373 bp Feature: domain Description: GIIM Note: maturase Location: 2478-2694 bp Feature: domain Description: GIIM Note: maturase Location: 2478-2694 bp Feature: domain Description: McrA Location: 2844-3090 bp Feature: domain Description: McrA Location: 2844-3090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJTL010000118.1 (13323 bp)
Overview 1 RT 1: 2-6382 bp Neighborhood of RT #1 [2, 6396] InsB RVT_N RVT-GII GIIM McrA glgA PLN02696 Feature: gene Location: 2-136 bp Feature: gene Location: 129-467 bp Feature: domain Description: InsB Location: 153-384 bp Feature: domain Description: InsB Location: 153-384 bp Feature: gene Location: 1458-3209 bp Feature: domain Description: RVT_N Location: 1497-1740 bp Feature: domain Description: RVT_N Location: 1497-1740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1785-2457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1785-2457 bp Feature: domain Description: GIIM Note: maturase Location: 2571-2766 bp Feature: domain Description: GIIM Note: maturase Location: 2571-2766 bp Feature: domain Description: McrA Location: 2919-3183 bp Feature: domain Description: McrA Location: 2919-3183 bp Feature: gene Location: 3693-5120 bp Feature: domain Description: glgA Location: 3696-5058 bp Feature: domain Description: glgA Location: 3696-5058 bp Feature: gene Location: 5206-6396 bp Feature: domain Description: PLN02696 Location: 5212-6382 bp Feature: domain Description: PLN02696 Location: 5212-6382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsB (COG1662), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), glgA (TIGR02095), PLN02696 (1-deoxy-D-xylulose-5-phosphate reductoisomerase)

Seq: JACJTL010000219.1 (3039 bp)
Overview 1 RT 1: 518-3038 bp Neighborhood of RT #1 [518, 3038] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 518-772 bp Feature: gene Location: 1075-2814 bp Feature: domain Description: RVT_N Location: 1114-1357 bp Feature: domain Description: RVT_N Location: 1114-1357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1402-2074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1402-2074 bp Feature: domain Description: GIIM Note: maturase Location: 2179-2410 bp Feature: domain Description: GIIM Note: maturase Location: 2179-2410 bp Feature: domain Description: HNHc Note: nucleases Location: 2623-2764 bp Feature: domain Description: HNHc Note: nucleases Location: 2623-2764 bp Feature: gene Location: 2832-3038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJTL010000290.1 (1671 bp)
Overview 1 RT 1: 3-1618 bp Neighborhood of RT #1 [3, 1668] RVT-GII GIIM HNHc Feature: gene Location: 3-185 bp Feature: gene Location: 505-1668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 511-928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 511-928 bp Feature: domain Description: GIIM Note: maturase Location: 1036-1258 bp Feature: domain Description: GIIM Note: maturase Location: 1036-1258 bp Feature: domain Description: HNHc Note: nucleases Location: 1477-1618 bp Feature: domain Description: HNHc Note: nucleases Location: 1477-1618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJTL010000221.1 (2926 bp)
Overview 1 RT 1: 297-2780 bp Neighborhood of RT #1 [297, 2780] DUF2973 DUF2605 RVT-GII GIIM McrA Feature: gene Location: 297-608 bp Feature: domain Description: DUF2973 Location: 300-519 bp Feature: domain Description: DUF2973 Location: 300-519 bp Feature: gene Location: 803-1144 bp Feature: domain Description: DUF2605 Location: 824-1103 bp Feature: domain Description: DUF2605 Location: 824-1103 bp Feature: gene Location: 1233-2450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1239-1620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1239-1620 bp Feature: domain Description: GIIM Note: maturase Location: 1740-1938 bp Feature: domain Description: GIIM Note: maturase Location: 1740-1938 bp Feature: domain Description: McrA Location: 2103-2352 bp Feature: domain Description: McrA Location: 2103-2352 bp Feature: gene Location: 2487-2780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2973 (pfam11189), DUF2605 (pfam10792), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJTL010000096.1 (17704 bp)
Overview 1 RT 1: 2-5456 bp Neighborhood of RT #1 [2, 5566] HTH_OrfB_IS605 InsQ RVT-GII GIIM HNHc COG5421 Feature: gene Location: 2-1435 bp Feature: domain Description: HTH_OrfB_IS605 Location: 569-671 bp Feature: domain Description: HTH_OrfB_IS605 Location: 569-671 bp Feature: domain Description: InsQ Location: 959-1427 bp Feature: domain Description: InsQ Location: 959-1427 bp Feature: gene Location: 1602-3080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1659-2328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1659-2328 bp Feature: domain Description: GIIM Note: maturase Location: 2427-2658 bp Feature: domain Description: GIIM Note: maturase Location: 2427-2658 bp Feature: domain Description: HNHc Note: nucleases Location: 2871-3018 bp Feature: domain Description: HNHc Note: nucleases Location: 2871-3018 bp Feature: gene Location: 3385-3705 bp Feature: gene Location: 3917-5566 bp Feature: domain Description: COG5421 Location: 3929-5456 bp Feature: domain Description: COG5421 Location: 3929-5456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_OrfB_IS605 (pfam12323), InsQ (COG0675), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG5421 (Transposase )

Seq: JACJTL010000008.1 (83509 bp)
Overview 1 RT 1: 22350-28477 bp Neighborhood of RT #1 [22350, 28497] Dam RVT_N RVT-GII GIIM HNHc PotA PBP2_PotD_PotF_like Feature: gene Location: 22350-23195 bp Feature: domain Description: Dam Location: 22404-23193 bp Feature: domain Description: Dam Location: 22404-23193 bp Feature: gene Location: 23214-23354 bp Feature: gene Location: 24280-26046 bp Feature: domain Description: RVT_N Location: 24349-24592 bp Feature: domain Description: RVT_N Location: 24349-24592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24637-25306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24637-25306 bp Feature: domain Description: GIIM Note: maturase Location: 25411-25624 bp Feature: domain Description: GIIM Note: maturase Location: 25411-25624 bp Feature: domain Description: HNHc Note: nucleases Location: 25855-26014 bp Feature: domain Description: HNHc Note: nucleases Location: 25855-26014 bp Feature: gene Location: 26172-27317 bp Feature: domain Description: PotA Location: 26223-27297 bp Feature: domain Description: PotA Location: 26223-27297 bp Feature: gene Location: 27364-28497 bp Feature: domain Description: PBP2_PotD_PotF_like Location: 27532-28477 bp Feature: domain Description: PBP2_PotD_PotF_like Location: 27532-28477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dam (pfam05869), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PotA (COG3842), PBP2_PotD_PotF_like (cd13590)

Seq: JACJTL010000244.1 (2299 bp)
Overview 1 RT 1: 188-2128 bp Neighborhood of RT #1 [188, 2298] RVT_N RVT-GII RVT-GII GIIM Feature: gene Location: 188-436 bp Feature: gene Location: 721-945 bp Feature: domain Description: RVT_N Location: 790-940 bp Feature: domain Description: RVT_N Location: 790-940 bp Feature: gene Location: 1077-1379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1164-1362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1164-1362 bp Feature: gene Location: 1450-2298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1456-1801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1456-1801 bp Feature: domain Description: GIIM Note: maturase Location: 1906-2128 bp Feature: domain Description: GIIM Note: maturase Location: 1906-2128 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JACJTL010000230.1 (2565 bp)
Overview 1 RT 1: 24-2554 bp Neighborhood of RT #1 [24, 2554] RVT-GII GIIM HNH RVT_N Feature: gene Location: 24-1496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108-759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108-759 bp Feature: domain Description: GIIM Note: maturase Location: 870-1068 bp Feature: domain Description: GIIM Note: maturase Location: 870-1068 bp Feature: domain Description: HNH Note: nucleases Location: 1332-1467 bp Feature: domain Description: HNH Note: nucleases Location: 1332-1467 bp Feature: gene Location: 1621-1845 bp Feature: domain Description: RVT_N Location: 1690-1840 bp Feature: domain Description: RVT_N Location: 1690-1840 bp Feature: gene Location: 2216-2554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844), RVT_N (pfam13655)

Seq: JACJTL010000131.1 (11555 bp)
Overview 1 RT 1: 7523-11553 bp Neighborhood of RT #1 [7523, 11553] DDE_3 RVT_N RVT-GII GIIM HNHc HNHc Feature: gene Location: 7523-7888 bp Feature: domain Description: DDE_3 Location: 7532-7880 bp Feature: domain Description: DDE_3 Location: 7532-7880 bp Feature: gene Location: 8693-8917 bp Feature: domain Description: RVT_N Location: 8762-8912 bp Feature: domain Description: RVT_N Location: 8762-8912 bp Feature: gene Location: 9121-10518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9127-9778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9127-9778 bp Feature: domain Description: GIIM Note: maturase Location: 9883-10105 bp Feature: domain Description: GIIM Note: maturase Location: 9883-10105 bp Feature: domain Description: HNHc Note: nucleases Location: 10327-10486 bp Feature: domain Description: HNHc Note: nucleases Location: 10327-10486 bp Feature: gene Location: 10875-11360 bp Feature: domain Description: HNHc Note: nucleases Location: 11160-11295 bp Feature: domain Description: HNHc Note: nucleases Location: 11160-11295 bp Feature: gene Location: 11371-11553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJTL010000139.1 (10728 bp)
Overview 1 RT 1: 6318-10544 bp Neighborhood of RT #1 [6318, 10544] COG3975 ParE_toxin RVT-GII GIIM HNHc Feature: gene Location: 6318-8141 bp Feature: domain Description: COG3975 Location: 6402-8121 bp Feature: domain Description: COG3975 Location: 6402-8121 bp Feature: gene Location: 8272-8574 bp Feature: domain Description: ParE_toxin Location: 8287-8548 bp Feature: domain Description: ParE_toxin Location: 8287-8548 bp Feature: gene Location: 9105-10121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9138-9363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9138-9363 bp Feature: domain Description: GIIM Note: maturase Location: 9468-9669 bp Feature: domain Description: GIIM Note: maturase Location: 9468-9669 bp Feature: domain Description: HNHc Note: nucleases Location: 9903-10068 bp Feature: domain Description: HNHc Note: nucleases Location: 9903-10068 bp Feature: gene Location: 10287-10544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3975 (Predicted metalloprotease, contains C-terminal PDZ domain ), ParE_toxin (pfam05016), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJTL010000034.1 (47480 bp)
Overview 1 RT 1: 74-2578 bp Neighborhood of RT #1 [74, 2578] RVT_N RVT-GII Feature: gene Location: 74-694 bp Feature: domain Description: RVT_N Location: 140-383 bp Feature: domain Description: RVT_N Location: 140-383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-650 bp Feature: gene Location: 1436-2152 bp Feature: gene Location: 2225-2578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJTL010000041.1 (42448 bp)
Overview 1 RT 1: 16099-22468 bp Neighborhood of RT #1 [16099, 22479] COG3415 DDE_3 Beta4Glucosyltransferase TPR_1 TPR RVT_N RVT-GII GIIM argC Usp Usp Feature: gene Location: 16099-16920 bp Feature: domain Description: COG3415 Location: 16108-16474 bp Feature: domain Description: COG3415 Location: 16108-16474 bp Feature: domain Description: DDE_3 Location: 16516-16912 bp Feature: domain Description: DDE_3 Location: 16516-16912 bp Feature: gene Location: 17241-18434 bp Feature: domain Description: Beta4Glucosyltransferase Location: 17247-17832 bp Feature: domain Description: Beta4Glucosyltransferase Location: 17247-17832 bp Feature: domain Description: TPR_1 Location: 17964-18051 bp Feature: domain Description: TPR_1 Location: 17964-18051 bp Feature: domain Description: TPR Location: 18078-18357 bp Feature: domain Description: TPR Location: 18078-18357 bp Feature: gene Location: 19251-20423 bp Feature: domain Description: RVT_N Location: 19359-19473 bp Feature: domain Description: RVT_N Location: 19359-19473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19770-20031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19770-20031 bp Feature: domain Description: GIIM Note: maturase Location: 20118-20343 bp Feature: domain Description: GIIM Note: maturase Location: 20118-20343 bp Feature: gene Location: 20581-21579 bp Feature: domain Description: argC Location: 20584-21577 bp Feature: domain Description: argC Location: 20584-21577 bp Feature: gene Location: 21628-22479 bp Feature: domain Description: Usp Location: 21631-22024 bp Feature: domain Description: Usp Location: 21631-22024 bp Feature: domain Description: Usp Location: 22051-22468 bp Feature: domain Description: Usp Location: 22051-22468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), DDE_3 (pfam13358), Beta4Glucosyltransferase (cd02511), TPR_1 (pfam00515), TPR (smart00028), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), argC (TIGR01850), Usp (pfam00582)

Seq: JACJTL010000164.1 (7139 bp)
Overview 1 RT 1: 574-7001 bp Neighborhood of RT #1 [574, 7117] RVT_N RVT-GII RVT-GII GIIM HNH RVT_N RVT-GII RVT-GII GIIM McrA RVT_N RVT-GII RVT-GII Feature: gene Location: 574-798 bp Feature: domain Description: RVT_N Location: 643-793 bp Feature: domain Description: RVT_N Location: 643-793 bp Feature: gene Location: 977-1231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 986-1214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 986-1214 bp Feature: gene Location: 1221-2393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1227-1653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1227-1653 bp Feature: domain Description: GIIM Note: maturase Location: 1758-1971 bp Feature: domain Description: GIIM Note: maturase Location: 1758-1971 bp Feature: domain Description: HNH Note: nucleases Location: 2229-2364 bp Feature: domain Description: HNH Note: nucleases Location: 2229-2364 bp Feature: gene Location: 3254-3478 bp Feature: domain Description: RVT_N Location: 3323-3473 bp Feature: domain Description: RVT_N Location: 3323-3473 bp Feature: gene Location: 3612-3911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3687-3894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3687-3894 bp Feature: gene Location: 4096-5052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4117-4333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4117-4333 bp Feature: domain Description: GIIM Note: maturase Location: 4438-4654 bp Feature: domain Description: GIIM Note: maturase Location: 4438-4654 bp Feature: domain Description: McrA Location: 4798-5038 bp Feature: domain Description: McrA Location: 4798-5038 bp Feature: gene Location: 5919-6143 bp Feature: domain Description: RVT_N Location: 5988-6138 bp Feature: domain Description: RVT_N Location: 5988-6138 bp Feature: gene Location: 6274-6576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6352-6559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6352-655 9 bp Feature: gene Location: 6740-7117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6773-7001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6773-7001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), McrA (COG4058)

Seq: JACJTL010000103.1 (15913 bp)
Overview 1 RT 1: 85-3214 bp Neighborhood of RT #1 [85, 3214] RVT-GII GIIM McrA Feature: gene Location: 85-408 bp Feature: gene Location: 763-900 bp Feature: gene Location: 1062-2549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1140-1791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1140-1791 bp Feature: domain Description: GIIM Note: maturase Location: 1896-2124 bp Feature: domain Description: GIIM Note: maturase Location: 1896-2124 bp Feature: domain Description: McrA Location: 2259-2520 bp Feature: domain Description: McrA Location: 2259-2520 bp Feature: gene Location: 2657-2947 bp Feature: gene Location: 3047-3214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJTL010000040.1 (44370 bp)
Overview 1 RT 1: 42390-44370 bp Neighborhood of RT #1 [42390, 44369] COG2442 RVT_N RVT-GII Feature: gene Location: 42390-42620 bp Feature: domain Description: COG2442 Location: 42399-42606 bp Feature: domain Description: COG2442 Location: 42399-42606 bp Feature: gene Location: 43128-43364 bp Feature: gene Location: 43647-44369 bp Feature: domain Description: RVT_N Location: 43716-43959 bp Feature: domain Description: RVT_N Location: 43716-43959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44004-44370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44004-44370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2442 (Uncharacterized conserved protein, DUF433 family ), RVT_N (pfam13655), RVT-GII

Seq: JACJTL010000283.1 (1744 bp)
Overview 1 RT 1: 545-1292 bp Neighborhood of RT #1 [545, 1292] RVT-GII Feature: gene Location: 545-781 bp Feature: gene Location: 797-1102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 803-1001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 803-1001 bp Feature: gene Location: 1140-1292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACJTL010000232.1 (2554 bp)
Overview 1 RT 1: 671-2553 bp Neighborhood of RT #1 [671, 2552] RVT-GII GIIM McrA COG3415 DDE_3 Feature: gene Location: 671-1681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-908 bp Feature: domain Description: GIIM Note: maturase Location: 1016-1223 bp Feature: domain Description: GIIM Note: maturase Location: 1016-1223 bp Feature: domain Description: McrA Location: 1379-1640 bp Feature: domain Description: McrA Location: 1379-1640 bp Feature: gene Location: 1593-2552 bp Feature: domain Description: COG3415 Location: 1806-2178 bp Feature: domain Description: COG3415 Location: 1806-2178 bp Feature: domain Description: DDE_3 Location: 2214-2553 bp Feature: domain Description: DDE_3 Location: 2214-2553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), COG3415 (Transposase ), DDE_3 (pfam13358)

Seq: JACJTL010000218.1 (3056 bp)
Overview 1 RT 1: 141-2755 bp Neighborhood of RT #1 [141, 2922] RVT-GII GIIM HNHc InsQ Feature: gene Location: 141-632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147-573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147-573 bp Feature: gene Location: 663-1361 bp Feature: domain Description: GIIM Note: maturase Location: 711-930 bp Feature: domain Description: GIIM Note: maturase Location: 711-930 bp Feature: domain Description: HNHc Note: nucleases Location: 1152-1293 bp Feature: domain Description: HNHc Note: nucleases Location: 1152-1293 bp Feature: gene Location: 2506-2922 bp Feature: domain Description: InsQ Location: 2521-2755 bp Feature: domain Description: InsQ Location: 2521-2755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), InsQ (COG0675)

Seq: JACJTL010000030.1 (51299 bp)
Overview 1 RT 1: 497-5296 bp Neighborhood of RT #1 [497, 5296] RVT_N RVT-GII GIIM McrA Feature: gene Location: 497-643 bp Feature: gene Location: 975-1199 bp Feature: domain Description: RVT_N Location: 1044-1194 bp Feature: domain Description: RVT_N Location: 1044-1194 bp Feature: gene Location: 1221-2018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1386-1998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1386-1998 bp Feature: gene Location: 3193-4044 bp Feature: domain Description: GIIM Note: maturase Location: 3277-3487 bp Feature: domain Description: GIIM Note: maturase Location: 3277-3487 bp Feature: domain Description: McrA Location: 3658-3907 bp Feature: domain Description: McrA Location: 3658-3907 bp Feature: gene Location: 4106-5296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJTL010000165.1 (7130 bp)
Overview 1 RT 1: 5401-6992 bp Neighborhood of RT #1 [5401, 7108] RVT_N RVT-GII Feature: gene Location: 5401-5622 bp Feature: gene Location: 5907-6131 bp Feature: domain Description: RVT_N Location: 5976-6126 bp Feature: domain Description: RVT_N Location: 5976-6126 bp Feature: gene Location: 6335-7108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6341-6992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6341-6992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJTL010000088.1 (21453 bp)
Overview 1 RT 1: 12727-17912 bp Neighborhood of RT #1 [12727, 18088] Cas2_I_II_III Cas1 RVT-CRISPR Cas1_I-II-III TPR_12 Feature: gene Location: 12727-13041 bp Feature: domain Description: Cas2_I_II_III Location: 12739-12970 bp Feature: domain Description: Cas2_I_II_III Location: 12739-12970 bp Feature: gene Location: 13038-13934 bp Feature: domain Description: Cas1 Location: 13044-13923 bp Feature: domain Description: Cas1 Location: 13044-13923 bp Feature: gene Location: 14114-16120 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 14342-14945 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 14342-14945 bp Feature: domain Description: Cas1_I-II-III Location: 15125-16082 bp Feature: domain Description: Cas1_I-II-III Location: 15125-16082 bp Feature: gene Location: 16906-17541 bp Feature: gene Location: 17573-18088 bp Feature: domain Description: TPR_12 Location: 17708-17912 bp Feature: domain Description: TPR_12 Location: 17708-17912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1 (COG1518), RVT-CRISPR, Cas1_I-II-III (cl00656), TPR_12 (pfam13424)

Seq: JACJTL010000250.1 (2216 bp)
Overview 1 RT 1: 391-2215 bp Neighborhood of RT #1 [391, 2215] RVT-GII GIIM RVT-GII Feature: gene Location: 391-1107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397-823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397-823 bp Feature: domain Description: GIIM Note: maturase Location: 931-1105 bp Feature: domain Description: GIIM Note: maturase Location: 931-1105 bp Feature: gene Location: 1097-1327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1103-1310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1103-1310 bp Feature: gene Location: 1673-1915 bp Feature: gene Location: 2069-2215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)