myRT

myRT report for GCA_014698815.1_ASM1469881v1

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Seq: JACJTS010000220.1 (4686 bp)
Overview 1 RT 1: 182-1923 bp Neighborhood of RT #1 [182, 1923] RVT_N RVT-GII Feature: gene Location: 182-586 bp Feature: domain Description: RVT_N Location: 221-302 bp Feature: domain Description: RVT_N Location: 221 -302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-560 bp Feature: gene Location: 1034-1174 bp Feature: gene Location: 1738-1923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJTS010000077.1 (26200 bp)
Overview 1 RT 1: 1-6043 bp Neighborhood of RT #1 [1, 6054] DDE_3 Beta4Glucosyltransferase TPR_1 TPR RVT_N RVT-GII GIIM argC Usp Usp Feature: gene Location: 1-495 bp Feature: domain Description: DDE_3 Location: 91-487 bp Feature: domain Description: DDE_3 Location: 91-487 bp Feature: gene Location: 816-2009 bp Feature: domain Description: Beta4Glucosyltransferase Location: 822-1407 bp Feature: domain Description: Beta4Glucosyltransferase Location: 82 2 -1407 bp Feature: domain Description: TPR_1 Location: 1539-1626 bp Feature: domain Description: TPR_1 Location: 1539-162 6 bp Feature: domain Description: TPR Location: 1653-1932 bp Feature: domain Description: TPR Location: 1653-1932 bp Feature: gene Location: 2826-3998 bp Feature: domain Description: RVT_N Location: 2934-3048 bp Feature: domain Description: RVT_N Location: 2 934-3048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3345-3606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3345-3606 bp Feature: domain Description: GIIM Note: maturase Location: 3693-3918 bp Feature: domain Description: GIIM Note: maturase Location: 3693-3918 bp Feature: gene Location: 4156-5154 bp Feature: domain Description: argC Location: 4159-5152 bp Feature: domain Description: argC Location: 4159-5152 bp Feature: gene Location: 5203-6054 bp Feature: domain Description: Usp Location: 5206-5599 bp Feature: domain Description: Usp Location: 52 06-5599 bp Feature: domain Description: Usp Location: 5626-6043 bp Feature: domain Description: Usp Location: 562 6-6043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), Beta4Glucosyltransferase (cd02511), TPR_1 (pfam00515), TPR (smart00028), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), argC (TIGR01850), Usp (pfam00582)

Seq: JACJTS010000064.1 (30501 bp)
Overview 1 RT 1: 27448-30282 bp Neighborhood of RT #1 [27448, 30311] Uma2 HicB RVT_N RVT-GII GIIM HNH Feature: gene Location: 27448-28002 bp Feature: domain Description: Uma2 Location: 27493-27973 bp Feature: domain Description: Uma2 Location: 27493 -27973 bp Feature: gene Location: 28223-28501 bp Feature: domain Description: HicB Location: 28298-28454 bp Feature: domain Description: HicB Location: 28298-28454 bp Feature: gene Location: 28545-30311 bp Feature: domain Description: RVT_N Location: 28614-28857 bp Feature: domain Description: RVT_N Location: 28614-28857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28902-29571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28902-29571 bp Feature: domain Description: GIIM Note: maturase Location: 29676-29889 bp Feature: domain Description: GIIM Note: maturase Location: 29676-29889 bp Feature: domain Description: HNH Note: nucleases Location: 30147-30282 bp Feature: domain Description: HNH Note: nucleases Location: 3 0147-3 0282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), HicB (pfam05534), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JACJTS010000115.1 (15873 bp)
Overview 1 RT 1: 12680-15809 bp Neighborhood of RT #1 [12680, 15809] RVT-GII GIIM McrA Feature: gene Location: 12680-12844 bp Feature: gene Location: 12947-13237 bp Feature: gene Location: 13345-14832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13423-14074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134 23-14 074 bp Feature: domain Description: GIIM Note: maturase Location: 14179-14407 bp Feature: domain Description: GIIM Note: maturase Location: 14 179-14 4 07 bp Feature: domain Description: McrA Location: 14542-14803 bp Feature: domain Description: McrA Location: 14 54 2-14 803 bp Feature: gene Location: 14994-15131 bp Feature: gene Location: 15486-15809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJTS010000277.1 (2694 bp)
Overview 1 RT 1: 3-1220 bp Neighborhood of RT #1 [3, 1220] RVT_N RVT-GII Feature: gene Location: 3-569 bp Feature: domain Description: RVT_N Location: 69-312 bp Feature: domain Description: RVT_N Location: 69-312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357-570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 7-5 70 bp Feature: gene Location: 756-965 bp Feature: gene Location: 1029-1220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJTS010000198.1 (6207 bp)
Overview 1 RT 1: 1-4588 bp Neighborhood of RT #1 [1, 4599] RVT-GII GIIM HNHc MhpC GT4_PimA-like Feature: gene Location: 1-129 bp Feature: gene Location: 164-400 bp Feature: gene Location: 416-1606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-848 bp Feature: domain Description: GIIM Note: maturase Location: 956-1175 bp Feature: domain Description: GIIM Note: maturase Location: 956 -1175 bp Feature: domain Description: HNHc Note: nucleases Location: 1397-1556 bp Feature: domain Description: HNHc Note: nucleases Location: 1397-1556 bp Feature: gene Location: 1761-2639 bp Feature: domain Description: MhpC Location: 1794-2601 bp Feature: domain Description: MhpC Location: 1794-26 01 bp Feature: gene Location: 3436-4599 bp Feature: domain Description: GT4_PimA-like Location: 3697-4588 bp Feature: domain Description: GT4_PimA-like Location: 36 97-4588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), MhpC (COG0596), GT4_PimA-like (cd03801)

Seq: JACJTS010000258.1 (3185 bp)
Overview 1 RT 1: 1287-3051 bp Neighborhood of RT #1 [1287, 3089] DNA_processg_A GIIM HNHc RVT-GII Feature: gene Location: 1287-1790 bp Feature: domain Description: DNA_processg_A Location: 1356-1602 bp Feature: domain Description: DNA_processg_A Location: 1356-1602 bp Feature: gene Location: 1893-2537 bp Feature: domain Description: GIIM Note: maturase Location: 1899-2103 bp Feature: domain Description: GIIM Note: maturase Location: 1899-2103 bp Feature: domain Description: HNHc Note: nucleases Location: 2322-2481 bp Feature: domain Description: HNHc Note: nucleases Location: 2322-2481 bp Feature: gene Location: 2664-3089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2670-3051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 267 0-3051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA_processg_A (pfam02481), GIIM (pfam08388), HNHc (smart00507), RVT-GII

Seq: JACJTS010000024.1 (51232 bp)
Overview 1 RT 1: 477-5279 bp Neighborhood of RT #1 [477, 5279] RVT_N RVT-GII GIIM McrA Feature: gene Location: 477-623 bp Feature: gene Location: 955-1179 bp Feature: domain Description: RVT_N Location: 1024-1174 bp Feature: domain Description: RVT_N Location: 1024-1174 bp Feature: gene Location: 1201-1998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1366-1978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1366-1978 bp Feature: gene Location: 3173-4024 bp Feature: domain Description: GIIM Note: maturase Location: 3257-3467 bp Feature: domain Description: GIIM Note: maturase Location: 3257-3467 bp Feature: domain Description: McrA Location: 3638-3887 bp Feature: domain Description: McrA Location: 3638 -38 8 7 bp Feature: gene Location: 4086-5279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJTS010000308.1 (2110 bp)
Overview 1 RT 1: 3-2108 bp Neighborhood of RT #1 [3, 2107] RVT-GII GIIM HNHc COG3415 DDE_3 Feature: gene Location: 3-134 bp Feature: gene Location: 376-1383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388-613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388-613 bp Feature: domain Description: GIIM Note: maturase Location: 724-925 bp Feature: domain Description: GIIM Note: maturase Location: 724-9 25 bp Feature: domain Description: HNHc Note: nucleases Location: 1159-1306 bp Feature: domain Description: HNHc Note: nucleases Location: 1159 -1306 bp Feature: gene Location: 1439-2107 bp Feature: domain Description: COG3415 Location: 1508-1880 bp Feature: domain Description: COG3415 Location: 1508-1880 bp Feature: domain Description: DDE_3 Location: 1916-2108 bp Feature: domain Description: DDE_3 Location: 19 16-2108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG3415 (Transposase ), DDE_3 (pfam13358)

Seq: JACJTS010000354.1 (1688 bp)
Overview 1 RT 1: 3-1524 bp Neighborhood of RT #1 [3, 1529] RVT-GII RVT_N Feature: gene Location: 3-140 bp Feature: gene Location: 476-631 bp Feature: gene Location: 851-1102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 857-1058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 857-10 58 bp Feature: gene Location: 1305-1529 bp Feature: domain Description: RVT_N Location: 1374-1524 bp Feature: domain Description: RVT_N Location: 1374-1524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RVT_N (pfam13655)

Seq: JACJTS010000002.1 (120033 bp)
Overview 1 RT 1: 241-3399 bp Neighborhood of RT #1 [241, 5213] RVT-GII HsdM Feature: gene Location: 241-819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247-817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247-817 bp Feature: gene Location: 1527-1751 bp Feature: gene Location: 2052-5213 bp Feature: domain Description: HsdM Location: 3048-3399 bp Feature: domain Description: HsdM Location: 3048-3399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HsdM (COG0286)

Seq: JACJTS010000128.1 (13294 bp)
Overview 1 RT 1: 6908-13103 bp Neighborhood of RT #1 [6908, 13186] PLN02696 glgA RVT_N RVT-GII GIIM McrA InsB Feature: gene Location: 6908-8098 bp Feature: domain Description: PLN02696 Location: 6914-8084 bp Feature: domain Description: PLN02696 Location: 6914-8084 bp Feature: gene Location: 8195-9622 bp Feature: domain Description: glgA Location: 8198-9560 bp Feature: domain Description: glgA Location: 8198-9560 bp Feature: gene Location: 10106-11857 bp Feature: domain Description: RVT_N Location: 10145-10388 bp Feature: domain Description: RVT_N Location: 10145-10388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10433-11105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10433-11105 bp Feature: domain Description: GIIM Note: maturase Location: 11219-11414 bp Feature: domain Description: GIIM Note: maturase Location: 112 19-11414 bp Feature: domain Description: McrA Location: 11567-11831 bp Feature: domain Description: McrA Location: 11567-11831 bp Feature: gene Location: 12848-13186 bp Feature: domain Description: InsB Location: 12872-13103 bp Feature: domain Description: InsB Location: 12 872-13103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLN02696 (1-deoxy-D-xylulose-5-phosphate reductoisomerase), glgA (TIGR02095), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), InsB (COG1662)

Seq: JACJTS010000160.1 (8686 bp)
Overview 1 RT 1: 7217-8479 bp Neighborhood of RT #1 [7217, 8505] RVT_N RVT-GII Feature: gene Location: 7217-7471 bp Feature: gene Location: 7857-8078 bp Feature: domain Description: RVT_N Location: 7923-8073 bp Feature: domain Description: RVT_N Location: 7923-8073 bp Feature: gene Location: 8209-8505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8287-8479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8287-8479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJTS010000136.1 (12360 bp)
Overview 1 RT 1: 132-6323 bp 2 RT 2: 9683-12265 bp Neighborhood of RT #1 [132, 6337] RVT-GII GIIM HNHc chaperone_ClpB PRK09303 TMAO_torS Neighborhood of RT #2 [9683, 12265] GatC PRK02603 RVT-GII GIIM HNH Feature: gene Location: 132-1301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138-567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138-567 bp Feature: domain Description: GIIM Note: maturase Location: 666-897 bp Feature: domain Description: GIIM Note: maturase Location: 666-897 bp Feature: domain Description: HNHc Note: nucleases Location: 1110-1251 bp Feature: domain Description: HNHc Note: nucleases Location: 1110-1251 bp Feature: gene Location: 1780-4398 bp Feature: domain Description: chaperone_ClpB Location: 1807-4360 bp Feature: domain Description: chaperone_ClpB Location: 1807-4360 bp Feature: gene Location: 4616-6337 bp Feature: domain Description: PRK09303 Location: 4805-5165 bp Feature: domain Description: PRK09303 Location: 4805-5165 bp Feature: domain Description: TMAO_torS Location: 5477-6323 bp Feature: domain Description: TMAO_torS Location: 5477-6323 bp Feature: gene Location: 9683-9976 bp Feature: domain Description: GatC Location: 9686-9965 bp Feature: domain Description: GatC Location: 9686-9965 bp Feature: gene Location: 9997-10518 bp Feature: domain Description: PRK02603 Location: 10000-10513 bp Feature: domain Description: PRK02603 Location: 10000-10513 bp Feature: gene Location: 10738-12075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10741-11338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10741-11338 bp Feature: domain Description: GIIM Note: maturase Location: 11446-11647 bp Feature: domain Description: GIIM Note: maturase Location: 114 46-11647 bp Feature: domain Description: HNH Note: nucleases Location: 11911-12046 bp Feature: domain Description: HNH Note: nucleases Location: 11911-12046 bp Feature: gene Location: 12101-12265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), chaperone_ClpB (TIGR03346), PRK09303 (histidine kinase), TMAO_torS (TIGR02956), GatC (COG0721), PRK02603 (photosystem I assembly protein Ycf3; Provisional), HNH (pfam01844)

Seq: JACJTS010000050.1 (34814 bp)
Overview 1 RT 1: 31277-34782 bp Neighborhood of RT #1 [31277, 34811] infC PLN02578 PLN02578 RVT-GII GIIM HNH Feature: gene Location: 31277-31822 bp Feature: domain Description: infC Location: 31295-31811 bp Feature: domain Description: infC Location: 31295-31811 bp Feature: gene Location: 31997-33058 bp Feature: domain Description: PLN02578 Location: 32156-32444 bp Feature: domain Description: PLN02578 Location: 3215 6-32444 bp Feature: domain Description: PLN02578 Location: 32624-33029 bp Feature: domain Description: PLN02578 Location: 32624-33029 bp Feature: gene Location: 33414-34811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33423-34074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33423-34074 bp Feature: domain Description: GIIM Note: maturase Location: 34185-34383 bp Feature: domain Description: GIIM Note: maturase Location: 34185-34383 bp Feature: domain Description: HNH Note: nucleases Location: 34647-34782 bp Feature: domain Description: HNH Note: nucleases Location: 34647-34782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT infC (TIGR00168), PLN02578 (hydrolase), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JACJTS010000347.1 (1739 bp)
Overview 1 RT 1: 1-1370 bp Neighborhood of RT #1 [1, 1387] RVT-GII GIIM McrA RVT-GII Feature: gene Location: 1-1086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-352 bp Feature: domain Description: GIIM Note: maturase Location: 439-652 bp Feature: domain Description: GIIM Note: maturase Location: 439-652 bp Feature: domain Description: McrA Location: 784-1063 bp Feature: domain Description: McrA Location: 784-1063 bp Feature: gene Location: 1157-1387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1163-1370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116 3-1370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJTS010000279.1 (2627 bp)
Overview 1 RT 1: 105-2474 bp Neighborhood of RT #1 [105, 2474] RVT-GII GIIM McrA RVT-GII RVT_N Feature: gene Location: 105-1277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111-537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111-537 bp Feature: domain Description: GIIM Note: maturase Location: 642-843 bp Feature: domain Description: GIIM Note: maturase Location: 642-843 bp Feature: domain Description: McrA Location: 1005-1251 bp Feature: domain Description: McrA Location: 1005-1251 bp Feature: gene Location: 1267-1497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1273-1480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1273-1480 bp Feature: gene Location: 1700-1924 bp Feature: domain Description: RVT_N Location: 1769-1919 bp Feature: domain Description: RVT_N Location: 17 69-1919 bp Feature: gene Location: 2208-2474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655)

Seq: JACJTS010000231.1 (4259 bp)
Overview 1 RT 1: 132-3316 bp Neighborhood of RT #1 [132, 3316] HNHc RVT-GII GIIM HNHc RVT_N Feature: gene Location: 132-617 bp Feature: domain Description: HNHc Note: nucleases Location: 417-552 bp Feature: domain Description: HNHc Note: nucleases Location: 417-552 bp Feature: gene Location: 974-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 980-1631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 980-1631 bp Feature: domain Description: GIIM Note: maturase Location: 1736-1958 bp Feature: domain Description: GIIM Note: maturase Location: 1736-1958 bp Feature: domain Description: HNHc Note: nucleases Location: 2180-2339 bp Feature: domain Description: HNHc Note: nucleases Location: 218 0-2339 bp Feature: gene Location: 2575-2799 bp Feature: domain Description: RVT_N Location: 2644-2794 bp Feature: domain Description: RVT_N Location: 2644-2794 bp Feature: gene Location: 3125-3316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: JACJTS010000296.1 (2391 bp)
Overview 1 RT 1: 865-2184 bp Neighborhood of RT #1 [865, 2210] RVT_N RVT-GII Feature: gene Location: 865-996 bp Feature: gene Location: 1059-1187 bp Feature: gene Location: 1614-2210 bp Feature: domain Description: RVT_N Location: 1683-1926 bp Feature: domain Description: RVT_N Location: 1683-19 26 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1971-2184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19 71-2184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJTS010000365.1 (1566 bp)
Overview 1 RT 1: 3-1349 bp Neighborhood of RT #1 [3, 1349] RVT-GII Feature: gene Location: 3-551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-435 bp Feature: gene Location: 710-958 bp Feature: gene Location: 1137-1349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACJTS010000298.1 (2377 bp)
Overview 1 RT 1: 2-2376 bp Neighborhood of RT #1 [2, 2376] RVT-GII GIIM RVT-GII Feature: gene Location: 2-208 bp Feature: gene Location: 552-1268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 558-984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 558-984 bp Feature: domain Description: GIIM Note: maturase Location: 1092-1266 bp Feature: domain Description: GIIM Note: maturase Location: 1092-1266 bp Feature: gene Location: 1258-1488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1264-1471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1264-1471 bp Feature: gene Location: 1834-2076 bp Feature: gene Location: 2230-2376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACJTS010000355.1 (1669 bp)
Overview 1 RT 1: 3-1523 bp Neighborhood of RT #1 [3, 1573] RVT-GII GIIM HNHc Feature: gene Location: 3-143 bp Feature: gene Location: 407-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-839 bp Feature: domain Description: GIIM Note: maturase Location: 938-1160 bp Feature: domain Description: GIIM Note: maturase Location: 938-1160 bp Feature: domain Description: HNHc Note: nucleases Location: 1382-1523 bp Feature: domain Description: HNHc Note: nucleases Location: 1382-1523 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJTS010000215.1 (4835 bp)
Overview 1 RT 1: 430-4834 bp Neighborhood of RT #1 [430, 4834] HTH_Tnp_IS630 DDE_3 RVT_N RVT-GII GIIM Feature: gene Location: 430-1134 bp Feature: domain Description: HTH_Tnp_IS630 Location: 514-874 bp Feature: domain Description: HTH_Tnp_IS630 Location: 514-874 bp Feature: domain Description: DDE_3 Location: 916-1123 bp Feature: domain Description: DDE_3 Location: 916-1123 bp Feature: gene Location: 1868-2281 bp Feature: domain Description: RVT_N Location: 1937-2180 bp Feature: domain Description: RVT_N Location: 1937-2180 bp Feature: gene Location: 2461-3303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2467-2893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2467-2893 bp Feature: domain Description: GIIM Note: maturase Location: 2998-3220 bp Feature: domain Description: GIIM Note: maturase Location: 2998-3220 bp Feature: gene Location: 3741-3944 bp Feature: gene Location: 4454-4834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_IS630 (pfam01710), DDE_3 (pfam13358), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JACJTS010000358.1 (1618 bp)
Overview 1 RT 1: 129-1247 bp Neighborhood of RT #1 [129, 1247] RVT_N RVT-GII Feature: gene Location: 129-707 bp Feature: domain Description: RVT_N Location: 198-441 bp Feature: domain Description: RVT_N Location: 198-441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 486-684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 486-684 bp Feature: gene Location: 783-956 bp Feature: gene Location: 990-1247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJTS010000331.1 (1912 bp)
Overview 1 RT 1: 3-1731 bp Neighborhood of RT #1 [3, 1731] RVT-GII GIIM HNHc Feature: gene Location: 3-143 bp Feature: gene Location: 409-1389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421-646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421-646 bp Feature: domain Description: GIIM Note: maturase Location: 751-985 bp Feature: domain Description: GIIM Note: maturase Location: 751-985 bp Feature: domain Description: HNHc Note: nucleases Location: 1198-1339 bp Feature: domain Description: HNHc Note: nucleases Location: 1198-1339 bp Feature: gene Location: 1576-1731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJTS010000267.1 (2972 bp)
Overview 1 RT 1: 213-2607 bp Neighborhood of RT #1 [213, 2696] RVT-GII GIIM McrA DUF2605 DUF2973 Feature: gene Location: 213-506 bp Feature: gene Location: 543-1760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 549-930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 549-930 bp Feature: domain Description: GIIM Note: maturase Location: 1050-1248 bp Feature: domain Description: GIIM Note: maturase Location: 1050-1248 bp Feature: domain Description: McrA Location: 1413-1662 bp Feature: domain Description: McrA Location: 1413-1662 bp Feature: gene Location: 1849-2190 bp Feature: domain Description: DUF2605 Location: 1870-2149 bp Feature: domain Description: DUF26 05 Location: 1870-2149 bp Feature: gene Location: 2385-2696 bp Feature: domain Description: DUF2973 Location: 2388-2607 bp Feature: domain Description: DUF2973 Location: 2388-26 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), DUF2605 (pfam10792), DUF2973 (pfam11189)

Seq: JACJTS010000147.1 (10781 bp)
Overview 1 RT 1: 223-2545 bp Neighborhood of RT #1 [223, 2545] RVT-GII GIIM McrA Feature: gene Location: 223-1737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298-949 bp Feature: domain Description: GIIM Note: maturase Location: 1084-1303 bp Feature: domain Description: GIIM Note: maturase Location: 1084-1303 bp Feature: domain Description: McrA Location: 1441-1711 bp Feature: domain Description: McrA Location: 1441-1711 bp Feature: gene Location: 1957-2199 bp Feature: gene Location: 2402-2545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJTS010000058.1 (31592 bp)
Overview 1 RT 1: 19782-26839 bp Neighborhood of RT #1 [19782, 26946] RVT_N RVT-GII GIIM HNH COG4249 CelA Feature: gene Location: 19782-19922 bp Feature: gene Location: 20000-20245 bp Feature: gene Location: 20530-22299 bp Feature: domain Description: RVT_N Location: 20599-20842 bp Feature: domain Description: RVT_N Location: 20599-20842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20887-21559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20887-21559 bp Feature: domain Description: GIIM Note: maturase Location: 21664-21874 bp Feature: domain Description: GIIM Note: maturase Location: 21664-21874 bp Feature: domain Description: HNH Note: nucleases Location: 22135-22270 bp Feature: domain Description: HNH Note: nucleases Location: 22135-22270 bp Feature: gene Location: 22525-24396 bp Feature: domain Description: COG4249 Location: 22549-23362 bp Feature: domain Description: COG4249 Location: 22549-23362 bp Feature: gene Location: 24685-26946 bp Feature: domain Description: CelA Location: 24940-26839 bp Feature: domain Description: CelA Location: 24940-26839 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG4249 (Uncharacterized protein, contains caspase domain ), CelA (TIGR03030)

Seq: JACJTS010000352.1 (1705 bp)
Overview 1 RT 1: 3-1450 bp Neighborhood of RT #1 [3, 1476] RVT_N RVT-GII Feature: gene Location: 3-143 bp Feature: gene Location: 879-1292 bp Feature: domain Description: RVT_N Location: 948-1191 bp Feature: domain Description: RVT_N Location: 948-1191 bp Feature: gene Location: 1252-1476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1258-1450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1258-1450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJTS010000226.1 (4494 bp)
Overview 1 RT 1: 1-1775 bp Neighborhood of RT #1 [1, 1775] RVT-GII RVT-GII RVT_N Feature: gene Location: 1-516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-352 bp Feature: gene Location: 587-817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 593-800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 593-800 bp Feature: gene Location: 1021-1245 bp Feature: domain Description: RVT_N Location: 1090-1240 bp Feature: domain Description: RVT_N Location: 1090-1240 bp Feature: gene Location: 1614-1775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RVT_N (pfam13655)

Seq: JACJTS010000249.1 (3462 bp)
Overview 1 RT 1: 62-3043 bp Neighborhood of RT #1 [62, 3093] RVT_N RVT_N RVT-GII RVT-GII GIIM HNH Feature: gene Location: 62-220 bp Feature: gene Location: 1254-1478 bp Feature: domain Description: RVT_N Location: 1323-1473 bp Feature: domain Description: RVT_N Location: 1323-1473 bp Feature: gene Location: 1500-1910 bp Feature: domain Description: RVT_N Location: 1539-1620 bp Feature: domain Description: RVT_N Location: 1539-1620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1665-1893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1665-1893 bp Feature: gene Location: 1900-3093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1906-2332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1906-2332 bp Feature: domain Description: GIIM Note: maturase Location: 2437-2665 bp Feature: domain Description: GIIM Note: maturase Location: 2437-2665 bp Feature: domain Description: HNH Note: nucleases Location: 2908-3043 bp Feature: domain Description: HNH Note: nucleases Location: 2908-3043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JACJTS010000264.1 (3083 bp)
Overview 1 RT 1: 444-3082 bp Neighborhood of RT #1 [444, 3082] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 444-698 bp Feature: gene Location: 1001-2740 bp Feature: domain Description: RVT_N Location: 1040-1283 bp Feature: domain Description: RVT_N Location: 1040-1283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1328-2000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 8-2000 bp Feature: domain Description: GIIM Note: maturase Location: 2105-2336 bp Feature: domain Description: GIIM Note: maturase Location: 2105-2336 bp Feature: domain Description: HNHc Note: nucleases Location: 2549-2690 bp Feature: domain Description: HNHc Note: nucleases Location: 2549-2690 bp Feature: gene Location: 2954-3082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJTS010000363.1 (1600 bp)
Overview 1 RT 1: 3-1281 bp Neighborhood of RT #1 [3, 1343] DDE_3 RVT-GII Feature: gene Location: 3-227 bp Feature: domain Description: DDE_3 Location: 21-228 bp Feature: domain Description: DDE_3 Location: 21-228 bp Feature: gene Location: 290-571 bp Feature: gene Location: 849-1343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855-1281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855-1281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-GII

Seq: JACJTS010000099.1 (19773 bp)
Overview 1 RT 1: 1-1992 bp Neighborhood of RT #1 [1, 1992] RVT-GII GIIM RVT_N Feature: gene Location: 1-1044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-604 bp Feature: domain Description: GIIM Note: maturase Location: 703-931 bp Feature: domain Description: GIIM Note: maturase Location: 703-931 bp Feature: gene Location: 1058-1471 bp Feature: domain Description: RVT_N Location: 1127-1370 bp Feature: domain Description: RVT_N Location: 1127-1370 bp Feature: gene Location: 1756-1992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: JACJTS010000307.1 (2110 bp)
Overview 1 RT 1: 1-2009 bp Neighborhood of RT #1 [1, 2009] RVT-GII GIIM McrA Feature: gene Location: 1-1488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-655 bp Feature: domain Description: GIIM Note: maturase Location: 760-967 bp Feature: domain Description: GIIM Note: maturase Location: 760-967 bp Feature: domain Description: McrA Location: 1096-1387 bp Feature: domain Description: McrA Location: 1096-1387 bp Feature: gene Location: 1668-2009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJTS010000251.1 (3405 bp)
Overview 1 RT 1: 1422-3155 bp Neighborhood of RT #1 [1422, 3155] RVT-GII GIIM Feature: gene Location: 1422-1850 bp Feature: gene Location: 1923-2069 bp Feature: gene Location: 2171-2908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2177-2603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2177-2603 bp Feature: domain Description: GIIM Note: maturase Location: 2738-2903 bp Feature: domain Description: GIIM Note: maturase Location: 2738-2903 bp Feature: gene Location: 2928-3155 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACJTS010000367.1 (1558 bp)
Overview 1 RT 1: 2-1556 bp Neighborhood of RT #1 [2, 1556] RVT-GII GIIM McrA Feature: gene Location: 2-1150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-410 bp Feature: domain Description: GIIM Note: maturase Location: 515-731 bp Feature: domain Description: GIIM Note: maturase Location: 515-731 bp Feature: domain Description: McrA Location: 881-1127 bp Feature: domain Description: McrA Location: 881-1127 bp Feature: gene Location: 1416-1556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJTS010000191.1 (6418 bp)
Overview 1 RT 1: 5059-6274 bp Neighborhood of RT #1 [5059, 6414] RVT_N RVT-GII Feature: gene Location: 5059-5427 bp Feature: gene Location: 5676-5900 bp Feature: domain Description: RVT_N Location: 5745-5895 bp Feature: domain Description: RVT_N Location: 5745-5895 bp Feature: gene Location: 6103-6414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6109-6274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6109-6274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJTS010000138.1 (11970 bp)
Overview 1 RT 1: 8891-11967 bp Neighborhood of RT #1 [8891, 11967] SH3_3 SH3_3 pheS RVT-GII GIIM HNHc Feature: gene Location: 8891-9547 bp Feature: domain Description: SH3_3 Location: 9080-9245 bp Feature: domain Description: SH3_3 Location: 9080-9245 bp Feature: domain Description: SH3_3 Location: 9359-9533 bp Feature: domain Description: SH3_3 Location: 9359-9533 bp Feature: gene Location: 9559-10560 bp Feature: domain Description: pheS Location: 9589-10558 bp Feature: domain Description: pheS Location: 9589-10558 bp Feature: gene Location: 10654-11766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10660-11008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10660-11008 bp Feature: domain Description: GIIM Note: maturase Location: 11113-11323 bp Feature: domain Description: GIIM Note: maturase Location: 11113-11323 bp Feature: domain Description: HNHc Note: nucleases Location: 11557-11698 bp Feature: domain Description: HNHc Note: nucleases Location: 11557-11698 bp Feature: gene Location: 11839-11967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SH3_3 (pfam08239), pheS (TIGR00468), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJTS010000029.1 (47654 bp)
Overview 1 RT 1: 32-2536 bp Neighborhood of RT #1 [32, 2536] RVT_N RVT-GII Feature: gene Location: 32-652 bp Feature: domain Description: RVT_N Location: 98-341 bp Feature: domain Description: RVT_N Location: 98-341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386-608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386-608 bp Feature: gene Location: 1394-2110 bp Feature: gene Location: 2183-2536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJTS010000146.1 (10817 bp)
Overview 1 RT 1: 6341-10567 bp Neighborhood of RT #1 [6341, 10567] COG3975 ParE_toxin RVT-GII GIIM HNHc Feature: gene Location: 6341-8164 bp Feature: domain Description: COG3975 Location: 6425-8144 bp Feature: domain Description: COG3975 Location: 6425-8144 bp Feature: gene Location: 8295-8597 bp Feature: domain Description: ParE_toxin Location: 8310-8571 bp Feature: domain Description: ParE_toxin Location: 8310-8571 bp Feature: gene Location: 9128-10144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9161-9386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9161-9386 bp Feature: domain Description: GIIM Note: maturase Location: 9491-9692 bp Feature: domain Description: GIIM Note: maturase Location: 9491-9692 bp Feature: domain Description: HNHc Note: nucleases Location: 9926-10091 bp Feature: domain Description: HNHc Note: nucleases Location: 9926-10091 bp Feature: gene Location: 10310-10567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3975 (Predicted metalloprotease, contains C-terminal PDZ domain ), ParE_toxin (pfam05016), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJTS010000211.1 (5101 bp)
Overview 1 RT 1: 1-1695 bp Neighborhood of RT #1 [1, 1695] RVT-GII Feature: gene Location: 1-999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166-835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166-835 bp Feature: gene Location: 1169-1312 bp Feature: gene Location: 1567-1695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACJTS010000309.1 (2102 bp)
Overview 1 RT 1: 243-2100 bp Neighborhood of RT #1 [243, 2100] RVT-GII GIIM HNHc Feature: gene Location: 243-470 bp Feature: gene Location: 490-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-922 bp Feature: domain Description: GIIM Note: maturase Location: 1030-1252 bp Feature: domain Description: GIIM Note: maturase Location: 1030-1252 bp Feature: domain Description: HNHc Note: nucleases Location: 1471-1612 bp Feature: domain Description: HNHc Note: nucleases Location: 1471-1612 bp Feature: gene Location: 1945-2100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJTS010000256.1 (3189 bp)
Overview 1 RT 1: 251-2663 bp Neighborhood of RT #1 [251, 2692] RVT-GII GIIM LipA Feature: gene Location: 251-478 bp Feature: gene Location: 498-1223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504-930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504-930 bp Feature: domain Description: GIIM Note: maturase Location: 1035-1218 bp Feature: domain Description: GIIM Note: maturase Location: 1035-1218 bp Feature: gene Location: 1814-2692 bp Feature: domain Description: LipA Location: 1823-2663 bp Feature: domain Description: LipA Location: 1823-2663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LipA (COG0320)

Seq: JACJTS010000083.1 (22613 bp)
Overview 1 RT 1: 14218-19092 bp Neighborhood of RT #1 [14218, 19268] Cas1_I-II-III Cas1_I-II-III RVT-CRISPR Cas1_I-II-III TPR_12 Feature: gene Location: 14218-15114 bp Feature: domain Description: Cas1_I-II-III Location: 14230-14584 bp Feature: domain Description: Cas1_I-II-III Location: 14230-145 84 bp Feature: domain Description: Cas1_I-II-III Location: 14740-15076 bp Feature: domain Description: Cas1_I-II-III Location: 14740-15076 bp Feature: gene Location: 15294-15446 bp Feature: gene Location: 15501-17300 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 15522-16125 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 15522-16125 bp Feature: domain Description: Cas1_I-II-III Location: 16305-17262 bp Feature: domain Description: Cas1_I-II-III Location: 16305-17262 bp Feature: gene Location: 18086-18721 bp Feature: gene Location: 18753-19268 bp Feature: domain Description: TPR_12 Location: 18888-19092 bp Feature: domain Description: TPR_12 Location: 18888-19092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas1_I-II-III (cl00656), RVT-CRISPR, TPR_12 (pfam13424)

Seq: JACJTS010000026.1 (50868 bp)
Overview 1 RT 1: 31130-39284 bp Neighborhood of RT #1 [31130, 39307] KOG4178 RVT-GII DUF1815 DUF2839 RVT_N RVT-GII GIIM NagA COG3744 Feature: gene Location: 31130-32032 bp Feature: domain Description: KOG4178 Location: 31178-32027 bp Feature: domain Description: KOG4178 Location: 31178-32027 bp Feature: gene Location: 32108-32389 bp Feature: gene Location: 32996-33388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33221-33383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33221-33383 bp Feature: gene Location: 33915-34073 bp Feature: gene Location: 34397-34741 bp Feature: domain Description: DUF1815 Location: 34403-34694 bp Feature: domain Description: DUF1815 Location: 34403-346 94 bp Feature: gene Location: 35161-35340 bp Feature: domain Description: DUF2839 Location: 35188-35329 bp Feature: domain Description: DUF2839 Location: 35188-35329 bp Feature: gene Location: 35442-36935 bp Feature: domain Description: RVT_N Location: 35487-35733 bp Feature: domain Description: RVT_N Location: 35487-35733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35817-36441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35817-36441 bp Feature: domain Description: GIIM Note: maturase Location: 36540-36774 bp Feature: domain Description: GIIM Note: maturase Location: 36540-36774 bp Feature: gene Location: 37684-38850 bp Feature: domain Description: NagA Location: 37765-38755 bp Feature: domain Description: NagA Location: 37765-38755 bp Feature: gene Location: 38906-39307 bp Feature: domain Description: COG3744 Location: 38915-39284 bp Feature: domain Description: COG3744 Location: 38915-39284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG4178 (KOG4178, Soluble epoxide hydrolase ), RVT-GII, DUF1815 (pfam08844), DUF2839 (pfam10999), RVT_N (pfam13655), GIIM (pfam08388), NagA (COG1820), COG3744 (PIN domain nuclease, a component of toxin-antitoxin system (PIN domain) )

Seq: JACJTS010000269.1 (2851 bp)
Overview 1 RT 1: 3-2517 bp Neighborhood of RT #1 [3, 2570] RVT-GII GIIM HNH PRK05716 Tic20 Feature: gene Location: 3-1172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-438 bp Feature: domain Description: GIIM Note: maturase Location: 537-744 bp Feature: domain Description: GIIM Note: maturase Location: 537-744 bp Feature: domain Description: HNH Note: nucleases Location: 1008-1143 bp Feature: domain Description: HNH Note: nucleases Location: 1008-1143 bp Feature: gene Location: 1366-2127 bp Feature: domain Description: PRK05716 Location: 1384-2122 bp Feature: domain Description: PRK05716 Location: 1384-2122 bp Feature: gene Location: 2259-2570 bp Feature: domain Description: Tic20 Location: 2292-2517 bp Feature: domain Description: Tic20 Location: 2292-2517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844), PRK05716 (methionine aminopeptidase; Validated), Tic20 (COG3296)

Seq: JACJTS010000328.1 (1919 bp)
Overview 1 RT 1: 1-1514 bp Neighborhood of RT #1 [1, 1514] HNH RVT-GII Feature: gene Location: 1-258 bp Feature: domain Description: HNH Note: nucleases Location: 73-208 bp Feature: domain Description: HNH Note: nucleases Location: 73-208 bp Feature: gene Location: 767-1003 bp Feature: gene Location: 1019-1324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1025-1223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1025-1223 bp Feature: gene Location: 1362-1514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH (pfam01844), RVT-GII

Seq: JACJTS010000337.1 (1828 bp)
Overview 1 RT 1: 1-1701 bp Neighborhood of RT #1 [1, 1730] RVT_N RVT-GII GIIM HNH Feature: gene Location: 1-396 bp Feature: domain Description: RVT_N Location: 31-274 bp Feature: domain Description: RVT_N Location: 31-274 bp Feature: gene Location: 555-1730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 561-990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 561-990 bp Feature: domain Description: GIIM Note: maturase Location: 1095-1305 bp Feature: domain Description: GIIM Note: maturase Location: 1095-1305 bp Feature: domain Description: HNH Note: nucleases Location: 1566-1701 bp Feature: domain Description: HNH Note: nucleases Location: 1566-1701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JACJTS010000079.1 (24814 bp)
Overview 1 RT 1: 3780-12836 bp Neighborhood of RT #1 [3780, 12836] COG5635 Pentapeptide WD40 WD40 WD40 WD40 WD40 NAD_bind_1_Glu_DH Lys9 RVT_N RVT-GII GIIM PRK07459 Feature: gene Location: 3780-8027 bp Feature: domain Description: COG5635 Location: 4008-5847 bp Feature: domain Description: COG5635 Location: 4008-5847 bp Feature: domain Description: Pentapeptide Location: 6003-6108 bp Feature: domain Description: Pentapeptide Location: 6003-6108 bp Feature: domain Description: WD40 Location: 6114-6999 bp Feature: domain Description: WD40 Location: 6114-6999 bp Feature: domain Description: WD40 Location: 7035-7137 bp Feature: domain Description: WD40 Location: 7035-7137 bp Feature: domain Description: WD40 Location: 7146-7263 bp Feature: domain Description: WD40 Location: 7146-7263 bp Feature: domain Description: WD40 Location: 7278-7389 bp Feature: domain Description: WD40 Location: 7278-7389 bp Feature: domain Description: WD40 Location: 7449-7944 bp Feature: domain Description: WD40 Location: 7449-7944 bp Feature: gene Location: 8384-9403 bp Feature: domain Description: NAD_bind_1_Glu_DH Location: 8441-8636 bp Feature: domain Description: NAD_bind_1_Glu_DH Location: 8441-8636 bp Feature: domain Description: Lys9 Location: 8669-8951 bp Feature: domain Description: Lys9 Location: 8669-8951 bp Feature: gene Location: 10173-11669 bp Feature: domain Description: RVT_N Location: 10203-10449 bp Feature: domain Description: RVT_N Location: 10203-10449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10491-11151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10491-11151 bp Feature: domain Description: GIIM Note: maturase Location: 11253-11490 bp Feature: domain Description: GIIM Note: maturase Location: 11253-11490 bp Feature: gene Location: 11929-12204 bp Feature: domain Description: PRK07459 Location: 11932-12181 bp Feature: domain Description: PRK07459 Location: 11932-12181 bp Feature: gene Location: 12303-12836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5635 (Predicted NTPase, NACHT family domain ), Pentapeptide (pfam00805), WD40 (smart00320), NAD_bind_1_Glu_DH (cd01076), Lys9 (COG1748), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK07459 (single-stranded DNA-binding protein; Provisional)

Seq: JACJTS010000350.1 (1720 bp)
Overview 1 RT 1: 305-1513 bp Neighborhood of RT #1 [305, 1539] RVT_N RVT-GII Feature: gene Location: 305-538 bp Feature: gene Location: 942-1355 bp Feature: domain Description: RVT_N Location: 1011-1254 bp Feature: domain Description: RVT_N Location: 1011-1254 bp Feature: gene Location: 1315-1539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1321-1513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1321-151 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACJTS010000194.1 (6379 bp)
Overview 1 RT 1: 1977-5988 bp Neighborhood of RT #1 [1977, 6017] YgbK OmpR RVT_N RVT-GII GIIM HNH Feature: gene Location: 1977-3293 bp Feature: domain Description: YgbK Location: 1989-3282 bp Feature: domain Description: YgbK Location: 1989-3282 bp Feature: gene Location: 3302-4063 bp Feature: domain Description: OmpR Location: 3311-3992 bp Feature: domain Description: OmpR Location: 3311-3992 bp Feature: gene Location: 4248-6017 bp Feature: domain Description: RVT_N Location: 4317-4560 bp Feature: domain Description: RVT_N Location: 4317-4560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4605-5277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4605-52 77 bp Feature: domain Description: GIIM Note: maturase Location: 5382-5589 bp Feature: domain Description: GIIM Note: maturase Location: 5382-5589 bp Feature: domain Description: HNH Note: nucleases Location: 5853-5988 bp Feature: domain Description: HNH Note: nucleases Location: 5853-5988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YgbK (COG3395), OmpR (COG0745), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JACJTS010000008.1 (79609 bp)
Overview 1 RT 1: 77415-79581 bp Neighborhood of RT #1 [77415, 79607] PIN_VapC4-5_FitB-like RVT-GII GIIM McrA Feature: gene Location: 77415-77822 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 77427-77784 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 77427-77784 bp Feature: gene Location: 78104-78310 bp Feature: gene Location: 78435-79607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78441-78867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78441-78867 bp Feature: domain Description: GIIM Note: maturase Location: 78972-79173 bp Feature: domain Description: GIIM Note: maturase Location: 78972-79173 bp Feature: domain Description: McrA Location: 79350-79581 bp Feature: domain Description: McrA Location: 79350-79581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_VapC4-5_FitB-like (cd18754), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACJTS010000313.1 (2039 bp)
Overview 1 RT 1: 1-1216 bp Neighborhood of RT #1 [1, 1599] RVT-GII Feature: gene Location: 1-1599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 526-1216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 526-1216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACJTS010000188.1 (6445 bp)
Overview 1 RT 1: 130-1884 bp Neighborhood of RT #1 [130, 1884] RVT-GII Feature: gene Location: 130-426 bp Feature: gene Location: 582-1268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654-1224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654-1224 bp Feature: gene Location: 1430-1567 bp Feature: gene Location: 1621-1884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACJTS010000289.1 (2475 bp)
Overview 1 RT 1: 621-2329 bp Neighborhood of RT #1 [621, 2397] RVT_N RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 621-1223 bp Feature: domain Description: RVT_N Location: 690-933 bp Feature: domain Description: RVT_N Location: 690-933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978-1206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978-1206 bp Feature: gene Location: 1177-2397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1213-1645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1213-1645 bp Feature: domain Description: GIIM Note: maturase Location: 1744-1972 bp Feature: domain Description: GIIM Note: maturase Location: 1744-1972 bp Feature: domain Description: HNHc Note: nucleases Location: 2188-2329 bp Feature: domain Description: HNHc Note: nucleases Location: 2188-2329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACJTS010000007.1 (98077 bp)
Overview 1 RT 1: 77-2334 bp Neighborhood of RT #1 [77, 2336] RVT-GII GIIM HNHc petB Feature: gene Location: 77-1306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98-548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98-548 bp Feature: domain Description: GIIM Note: maturase Location: 653-860 bp Feature: domain Description: GIIM Note: maturase Location: 653-860 bp Feature: domain Description: HNHc Note: nucleases Location: 1109-1256 bp Feature: domain Description: HNHc Note: nucleases Location: 1109-1256 bp Feature: gene Location: 1330-1506 bp Feature: gene Location: 1668-2336 bp Feature: domain Description: petB Location: 1695-2334 bp Feature: domain Description: petB Location: 1695-2334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), petB (CHL00070)

Seq: JACJTS010000101.1 (19313 bp)
Overview 1 RT 1: 14347-19287 bp Neighborhood of RT #1 [14347, 19287] MrcB McrA RVT-GII GIIM HNH Feature: gene Location: 14347-16281 bp Feature: domain Description: MrcB Location: 14455-16258 bp Feature: domain Description: MrcB Location: 14455-16258 bp Feature: gene Location: 16442-16903 bp Feature: domain Description: McrA Location: 16619-16877 bp Feature: domain Description: McrA Location: 16619-16877 bp Feature: gene Location: 16936-18399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17011-17662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17011-17662 bp Feature: domain Description: GIIM Note: maturase Location: 17776-17986 bp Feature: domain Description: GIIM Note: maturase Location: 17776-17986 bp Feature: domain Description: HNH Note: nucleases Location: 18235-18370 bp Feature: domain Description: HNH Note: nucleases Location: 18235-18370 bp Feature: gene Location: 18616-18744 bp Feature: gene Location: 19030-19287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MrcB (COG0744), McrA (COG4058), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JACJTS010000252.1 (3393 bp)
Overview 1 RT 1: 1283-3143 bp Neighborhood of RT #1 [1283, 3143] GIIM HNHc RVT-GII Feature: gene Location: 1283-1480 bp Feature: gene Location: 1676-2374 bp Feature: domain Description: GIIM Note: maturase Location: 1724-1943 bp Feature: domain Description: GIIM Note: maturase Location: 1724-1943 bp Feature: domain Description: HNHc Note: nucleases Location: 2165-2306 bp Feature: domain Description: HNHc Note: nucleases Location: 2165-2306 bp Feature: gene Location: 2405-2896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2411-2837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2411-2837 bp Feature: gene Location: 2871-3143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), RVT-GII

Seq: JACJTS010000179.1 (7115 bp)
Overview 1 RT 1: 570-6997 bp Neighborhood of RT #1 [570, 7113] RVT_N RVT-GII RVT-GII GIIM HNH RVT_N RVT-GII RVT-GII GIIM McrA RVT_N RVT-GII RVT-GII Feature: gene Location: 570-794 bp Feature: domain Description: RVT_N Location: 639-789 bp Feature: domain Description: RVT_N Location: 639-789 bp Feature: gene Location: 973-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 982-1210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 982-1210 bp Feature: gene Location: 1217-2389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1223-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1223-1649 bp Feature: domain Description: GIIM Note: maturase Location: 1754-1967 bp Feature: domain Description: GIIM Note: maturase Location: 1754-1967 bp Feature: domain Description: HNH Note: nucleases Location: 2225-2360 bp Feature: domain Description: HNH Note: nucleases Location: 2225-2360 bp Feature: gene Location: 3250-3474 bp Feature: domain Description: RVT_N Location: 3319-3469 bp Feature: domain Description: RVT_N Location: 3319-3469 bp Feature: gene Location: 3608-3907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3683-3890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3683-3890 bp Feature: gene Location: 4092-5048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4113-4329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4113-4329 bp Feature: domain Description: GIIM Note: maturase Location: 4434-4650 bp Feature: domain Description: GIIM Note: maturase Location: 4434-4650 bp Feature: domain Description: McrA Location: 4794-5034 bp Feature: domain Description: McrA Location: 4794-5034 bp Feature: gene Location: 5915-6139 bp Feature: domain Description: RVT_N Location: 5984-6134 bp Feature: domain Description: RVT_N Location: 5984-6134 bp Feature: gene Location: 6270-6572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6348-6555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6348-6555 bp Feature: gene Location: 6736-7113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6769-6997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6769-6997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), McrA (COG4058)

Seq: JACJTS010000020.1 (53887 bp)
Overview 1 RT 1: 21708-27835 bp Neighborhood of RT #1 [21708, 27855] Dam RVT_N RVT-GII GIIM HNHc PotA PBP2_PotD_PotF_like Feature: gene Location: 21708-22553 bp Feature: domain Description: Dam Location: 21762-22551 bp Feature: domain Description: Dam Location: 21762-22551 bp Feature: gene Location: 22572-22712 bp Feature: gene Location: 23638-25404 bp Feature: domain Description: RVT_N Location: 23707-23950 bp Feature: domain Description: RVT_N Location: 23707-23950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23995-24664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23995-24664 bp Feature: domain Description: GIIM Note: maturase Location: 24769-24982 bp Feature: domain Description: GIIM Note: maturase Location: 24769-24982 bp Feature: domain Description: HNHc Note: nucleases Location: 25213-25372 bp Feature: domain Description: HNHc Note: nucleases Location: 25213-25372 bp Feature: gene Location: 25530-26675 bp Feature: domain Description: PotA Location: 25581-26655 bp Feature: domain Description: PotA Location: 25581-26655 bp Feature: gene Location: 26722-27855 bp Feature: domain Description: PBP2_PotD_PotF_like Location: 26890-27835 bp Feature: domain Description: PBP2_PotD_PotF_like Location: 26890-27835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dam (pfam05869), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PotA (COG3842), PBP2_PotD_PotF_like (cd13590)

Seq: JACJTS010000122.1 (14630 bp)
Overview 1 RT 1: 1-3309 bp Neighborhood of RT #1 [1, 3314] HNH RVT-GII RVT-GII GIIM McrA FolB Feature: gene Location: 1-366 bp Feature: domain Description: HNH Note: nucleases Location: 181-316 bp Feature: domain Description: HNH Note: nucleases Location: 181-316 bp Feature: gene Location: 593-820 bp Feature: gene Location: 840-971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-969 bp Feature: gene Location: 1095-2030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1101-1272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1101-1272 bp Feature: domain Description: GIIM Note: maturase Location: 1377-1599 bp Feature: domain Description: GIIM Note: maturase Location: 1377-1599 bp Feature: domain Description: McrA Location: 1728-2004 bp Feature: domain Description: McrA Location: 1728-2004 bp Feature: gene Location: 2777-2929 bp Feature: gene Location: 2961-3314 bp Feature: domain Description: FolB Location: 2964-3309 bp Feature: domain Description: FolB Location: 2964-3309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH (pfam01844), RVT-GII, GIIM (pfam08388), McrA (COG4058), FolB (smart00905)

Seq: JACJTS010000259.1 (3179 bp)
Overview 1 RT 1: 306-3081 bp Neighborhood of RT #1 [306, 3081] tRNA_NucTran2_2 GIIM HNHc RVT-GII Feature: gene Location: 306-833 bp Feature: domain Description: tRNA_NucTran2_2 Location: 399-792 bp Feature: domain Description: tRNA_NucTran2_2 Location: 399-792 bp Feature: gene Location: 1123-1761 bp Feature: domain Description: GIIM Note: maturase Location: 1129-1336 bp Feature: domain Description: GIIM Note: maturase Location: 1129-1336 bp Feature: domain Description: HNHc Note: nucleases Location: 1555-1693 bp Feature: domain Description: HNHc Note: nucleases Location: 1555-1693 bp Feature: gene Location: 1984-2607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2059-2599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2059-2599 bp Feature: gene Location: 2890-3081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT tRNA_NucTran2_2 (pfam13735), GIIM (pfam08388), HNHc (smart00507), RVT-GII