myRT

myRT report for GCA_014860965.1_ASM1486096v1

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Seq: JACZQK010000105.1 Escherichia coli strain 193B1 193B1_S69_R1_(paired)_contig_105, whole genome shotgun sequence (2282 bp)
Overview 1 RT 1: 1-1936 bp Neighborhood of RT #1 [1, 2181] RVT-GII GIIM Feature: gene Location: 1-339 bp Feature: gene Location: 658-2181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931 -1 663 bp Feature: domain Description: GIIM Note: maturase Location: 1738-1936 bp Feature: domain Description: GIIM Note: maturase Location: 1 738-1 936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACZQK010000136.1 Escherichia coli strain 193B1 193B1_S69_R1_(paired)_contig_136, whole genome shotgun sequence (23255 bp)
Overview 1 RT 1: 14745-18716 bp Neighborhood of RT #1 [14745, 18721] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 14745-15080 bp Feature: gene Location: 15533-15742 bp Feature: gene Location: 15877-17778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16144-16975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16144-16975 bp Feature: domain Description: Intron_maturas2 Location: 17089-17347 bp Feature: domain Description: Intron_maturas2 Location: 17089-17347 bp Feature: domain Description: HNHc Note: nucleases Location: 17521-17683 bp Feature: domain Description: HNHc Note: nucleases Location: 1752 1-17683 bp Feature: gene Location: 17973-18425 bp Feature: domain Description: PRK13732 Location: 17979-18423 bp Feature: domain Description: PRK13732 Location: 17979-1842 3 bp Feature: gene Location: 18488-18721 bp Feature: domain Description: DUF905 Location: 18518-18716 bp Feature: domain Description: DUF905 Location: 18518-18716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JACZQK010000075.1 Escherichia coli strain 193B1 193B1_S69_R1_(paired)_contig_75, whole genome shotgun sequence (27058 bp)
Overview 1 RT 1: 19469-22524 bp Neighborhood of RT #1 [19469, 22524] RVT-GII RVT-GII GIIM Feature: gene Location: 19469-20374 bp Feature: gene Location: 20512-20703 bp Feature: gene Location: 20860-21399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21190-21268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21190-21268 bp Feature: gene Location: 21427-21948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21433-21715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2143 3 -21715 bp Feature: domain Description: GIIM Note: maturase Location: 21763-21943 bp Feature: domain Description: GIIM Note: maturase Location: 21763 -21943 bp Feature: gene Location: 22047-22226 bp Feature: gene Location: 22336-22524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACZQK010000092.1 Escherichia coli strain 193B1 193B1_S69_R1_(paired)_contig_92, whole genome shotgun sequence (26046 bp)
Overview 1 RT 1: 17784-21666 bp Neighborhood of RT #1 [17784, 21671] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 17784-18500 bp Feature: domain Description: rph Location: 17787-18495 bp Feature: domain Description: rph Location: 17787-184 95 bp Feature: gene Location: 18551-19207 bp Feature: domain Description: pyrE Location: 18569-19202 bp Feature: domain Description: pyrE Location: 18569-19202 bp Feature: gene Location: 19505-20464 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19640-20189 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1964 0-20189 bp Feature: gene Location: 20510-21106 bp Feature: domain Description: slmA Location: 20516-21092 bp Feature: domain Description: slmA Location: 20516-21092 bp Feature: gene Location: 21213-21671 bp Feature: domain Description: dut Location: 21219-21666 bp Feature: domain Description: dut Location: 21219-21666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)