myRT

myRT report for GCA_014860985.1_ASM1486098v1

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Seq: JACZQI010000030.1 Escherichia coli strain 191D3 191D3_S50_R1_(paired)_contig_30, whole genome shotgun sequence (131368 bp)
Overview 1 RT 1: 102838-108869 bp Neighborhood of RT #1 [102838, 108869] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 102838-103758 bp Feature: domain Description: AbiEii Location: 102880-103621 bp Feature: domain Description: AbiEii Location: 1 02880-1 03621 bp Feature: gene Location: 103745-104548 bp Feature: domain Description: AbiEi_3_N Location: 103778-104039 bp Feature: domain Description: AbiEi_3_N Location: 1 03778-1 04039 bp Feature: domain Description: AbiEi_3 Location: 104051-104507 bp Feature: domain Description: AbiEi_3 Location: 1 04051 -1 04507 bp Feature: gene Location: 104843-108052 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 105371-105860 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 05371 -1 05860 bp Feature: domain Description: nitrilase Location: 107366-107963 bp Feature: domain Description: nitrilase Location: 1 07366-1 07963 bp Feature: gene Location: 108213-108353 bp Feature: domain Description: Phage_ASH Location: 108240-108333 bp Feature: domain Description: Phage_ASH Location: 1 08240-1 08333 bp Feature: gene Location: 108399-108869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: JACZQI010000033.1 Escherichia coli strain 191D3 191D3_S50_R1_(paired)_contig_33, whole genome shotgun sequence (4417 bp)
Overview 1 RT 1: 2638-4403 bp Neighborhood of RT #1 [2638, 4414] RVT-GII HTH_Tnp_IS1 Feature: gene Location: 2638-3315 bp Feature: gene Location: 3330-3506 bp Feature: gene Location: 3570-3884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3690-3792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3690-3792 bp Feature: gene Location: 4235-4414 bp Feature: domain Description: HTH_Tnp_IS1 Location: 4268-4403 bp Feature: domain Description: HTH_Tnp_IS1 Location: 42 68-4403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_Tnp_IS1 (pfam12759)

Seq: JACZQI010000052.1 Escherichia coli strain 191D3 191D3_S50_R1_(paired)_contig_52, whole genome shotgun sequence (65338 bp)
Overview 1 RT 1: 24564-27619 bp Neighborhood of RT #1 [24564, 27619] RVT-GII RVT-GII GIIM Feature: gene Location: 24564-25469 bp Feature: gene Location: 25727-25924 bp Feature: gene Location: 25955-26494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26285-26363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26285-263 63 bp Feature: gene Location: 26522-27043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26528-26810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26528-26810 bp Feature: domain Description: GIIM Note: maturase Location: 26858-27038 bp Feature: domain Description: GIIM Note: maturase Location: 26858-2703 8 bp Feature: gene Location: 27142-27321 bp Feature: gene Location: 27431-27619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACZQI010000098.1 Escherichia coli strain 191D3 191D3_S50_R1_(paired)_contig_98, whole genome shotgun sequence (17743 bp)
Overview 1 RT 1: 1-2921 bp Neighborhood of RT #1 [1, 3088] RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: gene Location: 2333-2509 bp Feature: domain Description: PHA02517 Location: 2336-2438 bp Feature: domain Description: PHA02517 Location: 2336-24 38 bp Feature: gene Location: 2675-3088 bp Feature: domain Description: COG2085 Location: 2774-2921 bp Feature: domain Description: COG2085 Location: 2774 -2921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG2085 (Predicted dinucleotide-binding enzyme )