myRT

myRT report for GCA_014861045.1_ASM1486104v1

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Seq: JACZQE010000114.1 (42669 bp)
Overview 1 RT 1: 19279-23007 bp Neighborhood of RT #1 [19279, 23012] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 19279-19485 bp Feature: gene Location: 19819-20028 bp Feature: gene Location: 20163-22064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20430-21261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20430-21 261 bp Feature: domain Description: Intron_maturas2 Location: 21375-21633 bp Feature: domain Description: Intron_maturas2 Location: 21 375-21 633 bp Feature: domain Description: HNHc Note: nucleases Location: 21807-21969 bp Feature: domain Description: HNHc Note: nucleases Location: 21 807-21 969 bp Feature: gene Location: 22259-22711 bp Feature: domain Description: PRK13732 Location: 22265-22709 bp Feature: domain Description: PRK1 3732 Location: 22265-22709 bp Feature: gene Location: 22779-23012 bp Feature: domain Description: DUF905 Location: 22809-23007 bp Feature: domain Description: DUF905 Location: 22809-23007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JACZQE010000145.1 (4528 bp)
Overview 1 RT 1: 2-2321 bp Neighborhood of RT #1 [2, 2692] RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 2-1084 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 5-548 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 5-548 bp Feature: gene Location: 1197-1781 bp Feature: domain Description: Caudo_TAP Location: 1413-1770 bp Feature: domain Description: Caudo_TAP Location: 1413-1770 bp Feature: gene Location: 1790-2692 bp Feature: domain Description: Macro_Appr_pase Location: 1808-2321 bp Feature: domain Description: Macro_Appr_pase Location: 1808-2 32 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: JACZQE010000098.1 (13710 bp)
Overview 1 RT 1: 13-3331 bp Neighborhood of RT #1 [13, 3384] RVT-GII GIIM PHA02517 autotrans_barl Feature: gene Location: 13-384 bp Feature: gene Location: 678-2201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1683 bp Feature: domain Description: GIIM Note: maturase Location: 1758-1956 bp Feature: domain Description: GIIM Note: maturase Location: 1758-1956 bp Feature: gene Location: 2378-2764 bp Feature: domain Description: PHA02517 Location: 2381-2762 bp Feature: domain Description: PHA02517 Location: 23 81-2762 bp Feature: gene Location: 2767-3384 bp Feature: domain Description: autotrans_barl Location: 2890-3331 bp Feature: domain Description: autotrans_barl Location: 2890-3 3 3 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), autotrans_barl (TIGR01414)