myRT

myRT report for GCA_014861105.1_ASM1486110v1

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Seq: JACZQC010000127.1 Escherichia coli strain 183E3 183E3_S257_R1_(paired)_contig_127, whole genome shotgun sequence (2252 bp)
Overview 1 RT 1: 3-1393 bp Neighborhood of RT #1 [3, 1434] RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 3-677 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9-441 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9-441 bp Feature: gene Location: 703-948 bp Feature: gene Location: 1132-1434 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1141-1393 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 1 41 -1 393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Arm-DNA-bind_3 (pfam13356)

Seq: JACZQC010000146.1 Escherichia coli strain 183E3 183E3_S257_R1_(paired)_contig_146, whole genome shotgun sequence (7516 bp)
Overview 1 RT 1: 2-4015 bp Neighborhood of RT #1 [2, 4023] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 2-637 bp Feature: gene Location: 775-966 bp Feature: gene Location: 1123-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1453-1531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1453-1531 bp Feature: gene Location: 1690-2211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1696-1978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1696-1978 bp Feature: domain Description: GIIM Note: maturase Location: 2026-2206 bp Feature: domain Description: GIIM Note: maturase Location: 2 02 6-2 2 06 bp Feature: gene Location: 2533-2721 bp Feature: gene Location: 2761-4023 bp Feature: domain Description: YesM Location: 3274-4015 bp Feature: domain Description: YesM Location: 32 74-4015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: JACZQC010000161.1 Escherichia coli strain 183E3 183E3_S257_R1_(paired)_contig_161, whole genome shotgun sequence (2271 bp)
Overview 1 RT 1: 3-1934 bp Neighborhood of RT #1 [3, 2179] RVT-GII GIIM Feature: gene Location: 3-362 bp Feature: gene Location: 656-2179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 929-1661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 929-1661 bp Feature: domain Description: GIIM Note: maturase Location: 1736-1934 bp Feature: domain Description: GIIM Note: maturase Location: 173 6-193 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACZQC010000187.1 Escherichia coli strain 183E3 183E3_S257_R1_(paired)_contig_187, whole genome shotgun sequence (8902 bp)
Overview 1 RT 1: 1-2060 bp Neighborhood of RT #1 [1, 2167] RVT-Retrons PRK09678 Feature: gene Location: 1-279 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103-277 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103-277 bp Feature: gene Location: 281-1267 bp Feature: gene Location: 1895-2167 bp Feature: domain Description: PRK09678 Location: 1904-2060 bp Feature: domain Description: PRK09678 Location: 1904 -2060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)