myRT

myRT report for GCA_014861895.1_ASM1486189v1

Download annotations/find similar RTs

Seq: JACZPR010000012.1 Escherichia coli strain 170G7 170G7_S176_R1_(paired)_contig_12, whole genome shotgun sequence (118178 bp)
Overview 1 RT 1: 819-4289 bp Neighborhood of RT #1 [819, 4396] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 819-1121 bp Feature: domain Description: Arm-DNA-bind_3 Location: 828-1080 bp Feature: domain Description: Arm-DNA-bind_3 Location: 828-1 080 bp Feature: gene Location: 1305-1550 bp Feature: gene Location: 1576-2508 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1678-2272 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 678-2272 bp Feature: gene Location: 2510-3496 bp Feature: gene Location: 4124-4396 bp Feature: domain Description: PRK09678 Location: 4133-4289 bp Feature: domain Description: PRK09678 Location: 41 33-4289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: JACZPR010000033.1 Escherichia coli strain 170G7 170G7_S176_R1_(paired)_contig_33, whole genome shotgun sequence (104493 bp)
Overview 1 RT 1: 6226-10509 bp Neighborhood of RT #1 [6226, 10517] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 6226-7131 bp Feature: gene Location: 7269-7460 bp Feature: gene Location: 7617-8156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7947-8025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7947-802 5 bp Feature: gene Location: 8184-8705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8190-8472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8190-8472 bp Feature: domain Description: GIIM Note: maturase Location: 8520-8700 bp Feature: domain Description: GIIM Note: maturase Location: 852 0-8700 bp Feature: gene Location: 9027-9215 bp Feature: gene Location: 9255-10517 bp Feature: domain Description: YesM Location: 9768-10509 bp Feature: domain Description: YesM Location: 9768-10509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: JACZPR010000075.1 Escherichia coli strain 170G7 170G7_S176_R1_(paired)_contig_75, whole genome shotgun sequence (2409 bp)
Overview 1 RT 1: 682-1960 bp Neighborhood of RT #1 [682, 2205] RVT-GII GIIM Feature: gene Location: 682-2205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 955-1687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 955-1687 bp Feature: domain Description: GIIM Note: maturase Location: 1762-1960 bp Feature: domain Description: GIIM Note: maturase Location: 1762-1960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)