myRT

myRT report for GCA_014861985.1_ASM1486198v1

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Seq: JACZPK010000141.1 Escherichia coli strain 158H3 158H3CEPHYTEN188_S7_R1.flt_(paired)_contig_141, whole genome shotgun sequence (16561 bp)
Overview 1 RT 1: 3280-7377 bp Neighborhood of RT #1 [3280, 7544] PHA02517 RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 3280-4104 bp Feature: gene Location: 4231-4521 bp Feature: domain Description: PHA02517 Location: 4237-4456 bp Feature: domain Description: PHA0251 7 Location: 4237-4456 bp Feature: gene Location: 5113-6636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5386-6118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5386-61 1 8 bp Feature: domain Description: GIIM Note: maturase Location: 6193-6391 bp Feature: domain Description: GIIM Note: maturase Location: 61 93-6391 bp Feature: gene Location: 6789-6965 bp Feature: domain Description: PHA02517 Location: 6792-6894 bp Feature: domain Description: PHA0251 7 Location: 6792-6894 bp Feature: gene Location: 7131-7544 bp Feature: domain Description: COG2085 Location: 7230-7377 bp Feature: domain Description: COG2085 Location: 7230-7377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG2085 (Predicted dinucleotide-binding enzyme )

Seq: JACZPK010000254.1 Escherichia coli strain 158H3 158H3CEPHYTEN188_S7_R1.flt_(paired)_contig_254, whole genome shotgun sequence (3220 bp)
Overview 1 RT 1: 2-2357 bp Neighborhood of RT #1 [2, 2357] DDE_Tnp_IS1 RVT-GII Feature: gene Location: 2-211 bp Feature: domain Description: DDE_Tnp_IS1 Location: 5-209 bp Feature: domain Description: DDE_Tnp_IS1 Location: 5-2 09 bp Feature: gene Location: 213-527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333-435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333-435 bp Feature: gene Location: 782-1459 bp Feature: gene Location: 1989-2357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), RVT-GII

Seq: JACZPK010000257.1 Escherichia coli strain 158H3 158H3CEPHYTEN188_S7_R1.flt_(paired)_contig_257, whole genome shotgun sequence (10100 bp)
Overview 1 RT 1: 2176-5172 bp Neighborhood of RT #1 [2176, 5172] RVT-GII RVT-GII GIIM Feature: gene Location: 2176-3081 bp Feature: gene Location: 3219-3410 bp Feature: gene Location: 3567-4106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3897-3975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 897-3 975 bp Feature: gene Location: 4134-4655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4140-4422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4140-4422 bp Feature: domain Description: GIIM Note: maturase Location: 4470-4650 bp Feature: domain Description: GIIM Note: maturase Location: 4470-4650 bp Feature: gene Location: 4754-4927 bp Feature: gene Location: 4984-5172 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACZPK010000034.1 Escherichia coli strain 158H3 158H3CEPHYTEN188_S7_R1.flt_(paired)_contig_34, whole genome shotgun sequence (46523 bp)
Overview 1 RT 1: 20693-28394 bp Neighborhood of RT #1 [20693, 28531] proA RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 20693-21946 bp Feature: domain Description: proA Location: 20720-21911 bp Feature: domain Description: proA Location: 20720-21911 bp Feature: gene Location: 22500-22970 bp Feature: gene Location: 23317-26526 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23845-24334 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2384 5-24 334 bp Feature: domain Description: nitrilase Location: 25840-26437 bp Feature: domain Description: nitrilase Location: 2584 0-264 37 bp Feature: gene Location: 26821-27624 bp Feature: domain Description: AbiEi_3_N Location: 26854-27115 bp Feature: domain Description: AbiEi_3_N Location: 26854 -27115 bp Feature: domain Description: AbiEi_3 Location: 27127-27583 bp Feature: domain Description: AbiEi_3 Location: 27127-27583 bp Feature: gene Location: 27611-28531 bp Feature: domain Description: AbiEii Location: 27653-28394 bp Feature: domain Description: AbiEii Location: 27653-28394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)