myRT

myRT report for GCA_014862095.1_ASM1486209v1

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Seq: JACZPD010000045.1 Escherichia coli strain 139H5 139H5CEPHYTEN181_S8_R1.flt_(paired)_contig_45, whole genome shotgun sequence (46412 bp)
Overview 1 RT 1: 17882-23913 bp Neighborhood of RT #1 [17882, 23913] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 17882-18802 bp Feature: domain Description: AbiEii Location: 17924-18665 bp Feature: domain Description: AbiEii Location: 1 7924-1 8665 bp Feature: gene Location: 18789-19592 bp Feature: domain Description: AbiEi_3_N Location: 18822-19083 bp Feature: domain Description: AbiEi_3_N Location: 1 8822-1 9083 bp Feature: domain Description: AbiEi_3 Location: 19095-19551 bp Feature: domain Description: AbiEi_3 Location: 1 9095-1 9551 bp Feature: gene Location: 19887-23096 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 20415-20904 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2041 5-20904 bp Feature: domain Description: nitrilase Location: 22410-23007 bp Feature: domain Description: nitrilase Location: 2241 0-23007 bp Feature: gene Location: 23257-23397 bp Feature: domain Description: Phage_ASH Location: 23284-23377 bp Feature: domain Description: Phage_ASH Location: 23284-23377 bp Feature: gene Location: 23443-23913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: JACZPD010000047.1 Escherichia coli strain 139H5 139H5CEPHYTEN181_S8_R1.flt_(paired)_contig_47, whole genome shotgun sequence (126909 bp)
Overview 1 RT 1: 98904-103187 bp Neighborhood of RT #1 [98904, 103195] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 98904-99809 bp Feature: gene Location: 99947-100138 bp Feature: gene Location: 100295-100834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100625-100703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10062 5-100703 bp Feature: gene Location: 100862-101383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100868-101150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100868-101150 bp Feature: domain Description: GIIM Note: maturase Location: 101198-101378 bp Feature: domain Description: GIIM Note: maturase Location: 101198-101378 bp Feature: gene Location: 101705-101893 bp Feature: gene Location: 101933-103195 bp Feature: domain Description: YesM Location: 102446-103187 bp Feature: domain Description: YesM Location: 102 446-103187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: JACZPD010000005.1 Escherichia coli strain 139H5 139H5CEPHYTEN181_S8_R1.flt_(paired)_contig_5, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)