myRT

myRT report for GCA_014862265.1_ASM1486226v1

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Seq: JACZOV010000013.1 Escherichia coli strain 130E9 130E9CEPHYTEN178_S5_R1.flt_(paired)_contig_13, whole genome shotgun sequence (113495 bp)
Overview 1 RT 1: 82115-88146 bp Neighborhood of RT #1 [82115, 88146] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 82115-83035 bp Feature: domain Description: AbiEii Location: 82157-82898 bp Feature: domain Description: AbiEii Location: 821 57-82898 bp Feature: gene Location: 83022-83825 bp Feature: domain Description: AbiEi_3_N Location: 83055-83316 bp Feature: domain Description: AbiEi_3_N Location: 83055-8331 6 bp Feature: domain Description: AbiEi_3 Location: 83328-83784 bp Feature: domain Description: AbiEi_3 Location: 83328-83784 bp Feature: gene Location: 84120-87329 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 84648-85137 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 84648-851 37 bp Feature: domain Description: nitrilase Location: 86643-87240 bp Feature: domain Description: nitrilase Location: 86643-87240 bp Feature: gene Location: 87490-87630 bp Feature: domain Description: Phage_ASH Location: 87517-87610 bp Feature: domain Description: Phage_ASH Location: 8751 7-8761 0 bp Feature: gene Location: 87676-88146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: JACZOV010000148.1 Escherichia coli strain 130E9 130E9CEPHYTEN178_S5_R1.flt_(paired)_contig_148, whole genome shotgun sequence (3328 bp)
Overview 1 RT 1: 1989-3143 bp Neighborhood of RT #1 [1989, 3235] RVT-GII Feature: gene Location: 1989-2666 bp Feature: gene Location: 2681-2857 bp Feature: gene Location: 2921-3235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3041-3143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3041-3143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACZOV010000031.1 Escherichia coli strain 130E9 130E9CEPHYTEN178_S5_R1.flt_(paired)_contig_31, whole genome shotgun sequence (46122 bp)
Overview 1 RT 1: 17635-21956 bp Neighborhood of RT #1 [17635, 21956] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 17635-18897 bp Feature: domain Description: YesM Location: 18148-18889 bp Feature: domain Description: YesM Location: 18148-18889 bp Feature: gene Location: 18927-19097 bp Feature: gene Location: 19477-19998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19483-19765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19483 -19765 bp Feature: domain Description: GIIM Note: maturase Location: 19813-19993 bp Feature: domain Description: GIIM Note: maturase Location: 19813 -19993 bp Feature: gene Location: 20026-20565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20356-20434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203 56-2043 4 bp Feature: gene Location: 20596-20793 bp Feature: gene Location: 21051-21956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JACZOV010000088.1 Escherichia coli strain 130E9 130E9CEPHYTEN178_S5_R1.flt_(paired)_contig_88, whole genome shotgun sequence (19119 bp)
Overview 1 RT 1: 326-4423 bp Neighborhood of RT #1 [326, 4590] PHA02517 RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 326-1150 bp Feature: gene Location: 1277-1567 bp Feature: domain Description: PHA02517 Location: 1283-1502 bp Feature: domain Description: PHA02517 Location: 1283-1502 bp Feature: gene Location: 2159-3682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2432-3164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 32-3164 bp Feature: domain Description: GIIM Note: maturase Location: 3239-3437 bp Feature: domain Description: GIIM Note: maturase Location: 3239-34 37 bp Feature: gene Location: 3835-4011 bp Feature: domain Description: PHA02517 Location: 3838-3940 bp Feature: domain Description: PHA02517 Location: 3838-394 0 bp Feature: gene Location: 4177-4590 bp Feature: domain Description: COG2085 Location: 4276-4423 bp Feature: domain Description: COG2085 Location: 4 276-4 4 23 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG2085 (Predicted dinucleotide-binding enzyme )