myRT

myRT report for GCA_014862355.1_ASM1486235v1

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Seq: JACZOQ010000005.1 Escherichia coli strain 119H6 119H6CEPHYTEN173_S190_R1.flt_(paired)_contig_5, whole genome shotgun sequence (35299 bp)
Overview 1 RT 1: 19381-24798 bp Neighborhood of RT #1 [19381, 24798] psiB RVT-GII Intron_maturas2 HNHc Feature: gene Location: 19381-19815 bp Feature: domain Description: psiB Location: 19384-19810 bp Feature: domain Description: psiB Location: 1 9384-1 981 0 bp Feature: gene Location: 19868-21148 bp Feature: gene Location: 21340-23241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21607-22438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 607-22438 bp Feature: domain Description: Intron_maturas2 Location: 22552-22810 bp Feature: domain Description: Intron_maturas2 Location: 22552-2281 0 bp Feature: domain Description: HNHc Note: nucleases Location: 22984-23146 bp Feature: domain Description: HNHc Note: nucleases Location: 22984-231 46 bp Feature: gene Location: 23804-24346 bp Feature: gene Location: 24604-24798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT psiB (PRK13701), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JACZOQ010000051.1 Escherichia coli strain 119H6 119H6CEPHYTEN173_S190_R1.flt_(paired)_contig_51, whole genome shotgun sequence (45900 bp)
Overview 1 RT 1: 7606-10964 bp 2 RT 2: 35347-39668 bp Neighborhood of RT #1 [7606, 11029] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [35347, 39676] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 7606-7956 bp Feature: domain Description: InsE Location: 7615-7903 bp Feature: domain Description: InsE Location: 7615-7903 bp Feature: gene Location: 8061-8507 bp Feature: domain Description: PHA02517 Location: 8064-8505 bp Feature: domain Description: PHA02 517 Location: 8064-8505 bp Feature: gene Location: 8624-10147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8897-9629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8897-962 9 bp Feature: domain Description: GIIM Note: maturase Location: 9704-9902 bp Feature: domain Description: GIIM Note: maturase Location: 9704-9902 bp Feature: gene Location: 10101-10526 bp Feature: gene Location: 10739-11029 bp Feature: domain Description: PHA02517 Location: 10745-10964 bp Feature: domain Description: PHA02 517 Location: 10745-10964 bp Feature: gene Location: 35347-36252 bp Feature: gene Location: 36390-36581 bp Feature: gene Location: 36738-37277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37068-37146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37068-37146 bp Feature: gene Location: 37305-37826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37311-37593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37311-37593 bp Feature: domain Description: GIIM Note: maturase Location: 37641-37821 bp Feature: domain Description: GIIM Note: maturase Location: 37641-3782 1 bp Feature: gene Location: 38186-38374 bp Feature: gene Location: 38414-39676 bp Feature: domain Description: YesM Location: 38927-39668 bp Feature: domain Description: YesM Location: 3892 7-39668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: JACZOQ010000066.1 Escherichia coli strain 119H6 119H6CEPHYTEN173_S190_R1.flt_(paired)_contig_66, whole genome shotgun sequence (48730 bp)
Overview 1 RT 1: 9886-13768 bp Neighborhood of RT #1 [9886, 13773] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9886-10344 bp Feature: domain Description: dut Location: 9892-10339 bp Feature: domain Description: dut Location: 9892-103 3 9 bp Feature: gene Location: 10451-11047 bp Feature: domain Description: slmA Location: 10457-11033 bp Feature: domain Description: slmA Location: 10457-1103 3 bp Feature: gene Location: 11093-12052 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11228-11777 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11228-11777 bp Feature: gene Location: 12350-13006 bp Feature: domain Description: pyrE Location: 12368-13001 bp Feature: domain Description: pyrE Location: 123 68-13 001 bp Feature: gene Location: 13057-13773 bp Feature: domain Description: rph Location: 13060-13768 bp Feature: domain Description: rph Location: 13 060-13 768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)