myRT

myRT report for GCA_014862455.1_ASM1486245v1

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Seq: JACZON010000010.1 Escherichia coli strain 106G3 106G3CEPHYTEN170_S187_R1.flt_(paired)_contig_10, whole genome shotgun sequence (45761 bp)
Overview 1 RT 1: 33837-38120 bp Neighborhood of RT #1 [33837, 38128] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 33837-34742 bp Feature: gene Location: 35000-35197 bp Feature: gene Location: 35228-35767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35558-35636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35558-35636 bp Feature: gene Location: 35795-36316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35801-36083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35801 -36083 bp Feature: domain Description: GIIM Note: maturase Location: 36131-36311 bp Feature: domain Description: GIIM Note: maturase Location: 361 31 -3631 1 bp Feature: gene Location: 36638-36826 bp Feature: gene Location: 36866-38128 bp Feature: domain Description: YesM Location: 37379-38120 bp Feature: domain Description: YesM Location: 37379-381 20 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: JACZON010000035.1 Escherichia coli strain 106G3 106G3CEPHYTEN170_S187_R1.flt_(paired)_contig_35, whole genome shotgun sequence (3085 bp)
Overview 1 RT 1: 111-2683 bp Neighborhood of RT #1 [111, 2683] RVT-GII GIIM PHA02517 Feature: gene Location: 111-1634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384-1116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384-1116 bp Feature: domain Description: GIIM Note: maturase Location: 1191-1389 bp Feature: domain Description: GIIM Note: maturase Location: 1191-1389 bp Feature: gene Location: 2226-2705 bp Feature: domain Description: PHA02517 Location: 2286-2640 bp Feature: domain Description: PHA02 517 Location: 2 2 86-2 640 bp Feature: gene Location: 2555-2683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JACZON010000005.1 Escherichia coli strain 106G3 106G3CEPHYTEN170_S187_R1.flt_(paired)_contig_5, whole genome shotgun sequence (297232 bp)
Overview 1 RT 1: 818-4288 bp Neighborhood of RT #1 [818, 4395] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 818-1120 bp Feature: domain Description: Arm-DNA-bind_3 Location: 827-1079 bp Feature: domain Description: Arm-DNA-bind_3 Location: 827-1079 bp Feature: gene Location: 1304-1549 bp Feature: gene Location: 1575-2507 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1677-2271 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1677-2271 bp Feature: gene Location: 2509-3495 bp Feature: gene Location: 4123-4395 bp Feature: domain Description: PRK09678 Location: 4132-4288 bp Feature: domain Description: PRK09678 Location: 413 2-4288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)