myRT

myRT report for GCA_014862645.1_ASM1486264v1

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Seq: JACZOC010000011.1 Escherichia coli strain 219E5 219E5CEPHYTEN184_S6_R1.flt_(paired)_contig_11, whole genome shotgun sequence (131303 bp)
Overview 1 RT 1: 22151-28394 bp Neighborhood of RT #1 [22151, 28531] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22151-22417 bp Feature: domain Description: Phage_integrase Location: 22217-22313 bp Feature: domain Description: Phage_integrase Location: 2221 7-2231 3 bp Feature: gene Location: 22500-22970 bp Feature: gene Location: 23317-26526 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23845-24334 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23845-24334 bp Feature: domain Description: nitrilase Location: 25840-26437 bp Feature: domain Description: nitrilase Location: 25840-26437 bp Feature: gene Location: 26821-27624 bp Feature: domain Description: AbiEi_3_N Location: 26854-27115 bp Feature: domain Description: AbiEi_3_N Location: 26854-271 1 5 bp Feature: domain Description: AbiEi_3 Location: 27127-27583 bp Feature: domain Description: AbiEi_3 Location: 271 27-27583 bp Feature: gene Location: 27611-28531 bp Feature: domain Description: AbiEii Location: 27653-28394 bp Feature: domain Description: AbiEii Location: 27653-28394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: JACZOC010000012.1 Escherichia coli strain 219E5 219E5CEPHYTEN184_S6_R1.flt_(paired)_contig_12, whole genome shotgun sequence (20858 bp)
Overview 1 RT 1: 15994-19645 bp Neighborhood of RT #1 [15994, 19650] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 15994-16134 bp Feature: gene Location: 16468-16677 bp Feature: gene Location: 16812-18713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17079-17910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17079-17910 bp Feature: domain Description: Intron_maturas2 Location: 18024-18282 bp Feature: domain Description: Intron_maturas2 Location: 1802 4-182 82 bp Feature: domain Description: HNHc Note: nucleases Location: 18456-18618 bp Feature: domain Description: HNHc Note: nucleases Location: 18456-18618 bp Feature: gene Location: 18908-19360 bp Feature: domain Description: PRK13732 Location: 18914-19358 bp Feature: domain Description: PRK13732 Location: 18914-19358 bp Feature: gene Location: 19417-19650 bp Feature: domain Description: DUF905 Location: 19447-19645 bp Feature: domain Description: DUF905 Location: 19447-19645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JACZOC010000014.1 Escherichia coli strain 219E5 219E5CEPHYTEN184_S6_R1.flt_(paired)_contig_14, whole genome shotgun sequence (50421 bp)
Overview 1 RT 1: 24544-27599 bp Neighborhood of RT #1 [24544, 27599] RVT-GII RVT-GII GIIM Feature: gene Location: 24544-25449 bp Feature: gene Location: 25707-25904 bp Feature: gene Location: 25935-26474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26265-26343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26265-263 43 bp Feature: gene Location: 26502-27023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26508-26790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26508-26790 bp Feature: domain Description: GIIM Note: maturase Location: 26838-27018 bp Feature: domain Description: GIIM Note: maturase Location: 2683 8-27018 bp Feature: gene Location: 27122-27301 bp Feature: gene Location: 27411-27599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACZOC010000084.1 Escherichia coli strain 219E5 219E5CEPHYTEN184_S6_R1.flt_(paired)_contig_84, whole genome shotgun sequence (15357 bp)
Overview 1 RT 1: 1-2921 bp Neighborhood of RT #1 [1, 3088] RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: gene Location: 2333-2509 bp Feature: domain Description: PHA02517 Location: 2336-2438 bp Feature: domain Description: PHA02517 Location: 2336-24 38 bp Feature: gene Location: 2675-3088 bp Feature: domain Description: COG2085 Location: 2774-2921 bp Feature: domain Description: COG2085 Location: 2774 -2921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG2085 (Predicted dinucleotide-binding enzyme )