myRT

myRT report for GCA_014862665.1_ASM1486266v1

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Seq: JACZOD010000040.1 Escherichia coli strain 221J8 221J8CEPHYTEN185_S7_R1.flt_(paired)_contig_40, whole genome shotgun sequence (145233 bp)
Overview 1 RT 1: 169-7704 bp Neighborhood of RT #1 [169, 7841] Beta_helix RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 169-1116 bp Feature: domain Description: Beta_helix Location: 214-832 bp Feature: domain Description: Beta_helix Location: 21 4-832 bp Feature: gene Location: 1810-2280 bp Feature: gene Location: 2627-5836 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3155-3644 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 31 55-3644 bp Feature: domain Description: nitrilase Location: 5150-5747 bp Feature: domain Description: nitrilase Location: 51 50-5747 bp Feature: gene Location: 6131-6934 bp Feature: domain Description: AbiEi_3_N Location: 6164-6425 bp Feature: domain Description: AbiEi_3_N Location: 61 64-6425 bp Feature: domain Description: AbiEi_3 Location: 6437-6893 bp Feature: domain Description: AbiEi_3 Location: 6437-6893 bp Feature: gene Location: 6921-7841 bp Feature: domain Description: AbiEii Location: 6963-7704 bp Feature: domain Description: AbiEii Location: 6963-7704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Beta_helix (pfam13229), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: JACZOD010000059.1 Escherichia coli strain 221J8 221J8CEPHYTEN185_S7_R1.flt_(paired)_contig_59, whole genome shotgun sequence (112039 bp)
Overview 1 RT 1: 98903-103186 bp Neighborhood of RT #1 [98903, 103194] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 98903-99808 bp Feature: gene Location: 99946-100137 bp Feature: gene Location: 100294-100833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100624-100702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10062 4-100702 bp Feature: gene Location: 100861-101382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100867-101149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100867-101149 bp Feature: domain Description: GIIM Note: maturase Location: 101197-101377 bp Feature: domain Description: GIIM Note: maturase Location: 101197-101377 bp Feature: gene Location: 101704-101892 bp Feature: gene Location: 101932-103194 bp Feature: domain Description: YesM Location: 102445-103186 bp Feature: domain Description: YesM Location: 102 445-103186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: JACZOD010000007.1 Escherichia coli strain 221J8 221J8CEPHYTEN185_S7_R1.flt_(paired)_contig_7, whole genome shotgun sequence (26650 bp)
Overview 1 RT 1: 23034-26164 bp Neighborhood of RT #1 [23034, 26164] PinE RVT-GII GIIM Feature: gene Location: 23034-23681 bp Feature: domain Description: PinE Location: 23127-23676 bp Feature: domain Description: PinE Location: 23 127-23 676 bp Feature: gene Location: 23781-24182 bp Feature: gene Location: 24391-25743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24712-25330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24712-253 3 0 bp Feature: domain Description: GIIM Note: maturase Location: 25378-25609 bp Feature: domain Description: GIIM Note: maturase Location: 253 78-25609 bp Feature: gene Location: 25814-26164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, GIIM (pfam08388)

Seq: JACZOD010000081.1 Escherichia coli strain 221J8 221J8CEPHYTEN185_S7_R1.flt_(paired)_contig_81, whole genome shotgun sequence (16638 bp)
Overview 1 RT 1: 4367-8006 bp Neighborhood of RT #1 [4367, 8173] InsE PHA02517 RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 4367-4669 bp Feature: domain Description: InsE Location: 4406-4655 bp Feature: domain Description: InsE Location: 4 4 06-4 655 bp Feature: gene Location: 4725-5150 bp Feature: domain Description: PHA02517 Location: 4749-5085 bp Feature: domain Description: PHA02517 Location: 4 74 9-5085 bp Feature: gene Location: 5742-7265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6015-6747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6015-674 7 bp Feature: domain Description: GIIM Note: maturase Location: 6822-7020 bp Feature: domain Description: GIIM Note: maturase Location: 6822-7020 bp Feature: gene Location: 7418-7594 bp Feature: domain Description: PHA02517 Location: 7421-7523 bp Feature: domain Description: PHA02517 Location: 74 21-7523 bp Feature: gene Location: 7760-8173 bp Feature: domain Description: COG2085 Location: 7859-8006 bp Feature: domain Description: COG2085 Location: 7859-8006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG2085 (Predicted dinucleotide-binding enzyme )