myRT

myRT report for GCA_014862695.1_ASM1486269v1

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Seq: JACZOB010000134.1 Escherichia coli strain 218D3 218D3CEPHYTEN183_S5_R1.flt_(paired)_contig_134, whole genome shotgun sequence (3023 bp)
Overview 1 RT 1: 61-2205 bp Neighborhood of RT #1 [61, 2205] RVT-GII Feature: gene Location: 61-375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181-283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 -283 bp Feature: gene Location: 630-1307 bp Feature: gene Location: 1837-2205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACZOB010000026.1 Escherichia coli strain 218D3 218D3CEPHYTEN183_S5_R1.flt_(paired)_contig_26, whole genome shotgun sequence (70986 bp)
Overview 1 RT 1: 42131-46456 bp Neighborhood of RT #1 [42131, 46456] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 42131-43393 bp Feature: domain Description: YesM Location: 42644-43385 bp Feature: domain Description: YesM Location: 42 644-43385 bp Feature: gene Location: 43423-43593 bp Feature: gene Location: 43977-44498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43983-44265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43983-442 65 bp Feature: domain Description: GIIM Note: maturase Location: 44313-44493 bp Feature: domain Description: GIIM Note: maturase Location: 44313-44493 bp Feature: gene Location: 44526-45065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44856-44934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44856-44934 bp Feature: gene Location: 45096-45293 bp Feature: gene Location: 45551-46456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JACZOB010000028.1 Escherichia coli strain 218D3 218D3CEPHYTEN183_S5_R1.flt_(paired)_contig_28, whole genome shotgun sequence (110645 bp)
Overview 1 RT 1: 82115-88146 bp Neighborhood of RT #1 [82115, 88146] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 82115-83035 bp Feature: domain Description: AbiEii Location: 82157-82898 bp Feature: domain Description: AbiEii Location: 82157-82898 bp Feature: gene Location: 83022-83825 bp Feature: domain Description: AbiEi_3_N Location: 83055-83316 bp Feature: domain Description: AbiEi_3 _N Location: 83 055-83 3 16 bp Feature: domain Description: AbiEi_3 Location: 83328-83784 bp Feature: domain Description: AbiEi_3 Location: 83 3 28-83 784 bp Feature: gene Location: 84120-87329 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 84648-85137 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 84648-8513 7 bp Feature: domain Description: nitrilase Location: 86643-87240 bp Feature: domain Description: nitrilase Location: 86643 -87240 bp Feature: gene Location: 87490-87630 bp Feature: domain Description: Phage_ASH Location: 87517-87610 bp Feature: domain Description: Phage_ASH Location: 87517-87610 bp Feature: gene Location: 87676-88146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: JACZOB010000072.1 Escherichia coli strain 218D3 218D3CEPHYTEN183_S5_R1.flt_(paired)_contig_72, whole genome shotgun sequence (17786 bp)
Overview 1 RT 1: 14699-17783 bp Neighborhood of RT #1 [14699, 17783] COG2085 PHA02517 RVT-GII GIIM Feature: gene Location: 14699-15112 bp Feature: domain Description: COG2085 Location: 14798-14945 bp Feature: domain Description: COG2085 Location: 14 798-14 94 5 bp Feature: gene Location: 15278-15454 bp Feature: domain Description: PHA02517 Location: 15281-15383 bp Feature: domain Description: PHA02517 Location: 15281-15383 bp Feature: gene Location: 15607-17130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15880-16612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15880-16612 bp Feature: domain Description: GIIM Note: maturase Location: 16687-16885 bp Feature: domain Description: GIIM Note: maturase Location: 16687-16885 bp Feature: gene Location: 17424-17783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2085 (Predicted dinucleotide-binding enzyme ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)