myRT

myRT report for GCA_014862785.1_ASM1486278v1

Download annotations/find similar RTs

Seq: JACZNV010000133.1 Escherichia coli strain 213F1 213F1CEPHYTEN177_S157_R1.flt_(paired)_contig_133, whole genome shotgun sequence (53287 bp)
Overview 1 RT 1: 24564-27619 bp Neighborhood of RT #1 [24564, 27619] RVT-GII RVT-GII GIIM Feature: gene Location: 24564-25469 bp Feature: gene Location: 25727-25924 bp Feature: gene Location: 25955-26494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26285-26363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26285-26363 bp Feature: gene Location: 26522-27043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26528-26810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26528-2681 0 bp Feature: domain Description: GIIM Note: maturase Location: 26858-27038 bp Feature: domain Description: GIIM Note: maturase Location: 26858-27038 bp Feature: gene Location: 27142-27321 bp Feature: gene Location: 27431-27619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACZNV010000021.1 Escherichia coli strain 213F1 213F1CEPHYTEN177_S157_R1.flt_(paired)_contig_21, whole genome shotgun sequence (110644 bp)
Overview 1 RT 1: 22151-28394 bp Neighborhood of RT #1 [22151, 28531] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22151-22417 bp Feature: domain Description: Phage_integrase Location: 22217-22313 bp Feature: domain Description: Phage_integrase Location: 2 2 2 17-2 2 313 bp Feature: gene Location: 22500-22970 bp Feature: gene Location: 23317-26526 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23845-24334 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 3845-2 4334 bp Feature: domain Description: nitrilase Location: 25840-26437 bp Feature: domain Description: nitrilase Location: 2 5840-2 6437 bp Feature: gene Location: 26821-27624 bp Feature: domain Description: AbiEi_3_N Location: 26854-27115 bp Feature: domain Description: AbiEi_3_N Location: 2 6854-2 7115 bp Feature: domain Description: AbiEi_3 Location: 27127-27583 bp Feature: domain Description: AbiEi_3 Location: 2 712 7-2 7583 bp Feature: gene Location: 27611-28531 bp Feature: domain Description: AbiEii Location: 27653-28394 bp Feature: domain Description: AbiEii Location: 2 7653-2 8394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: JACZNV010000225.1 Escherichia coli strain 213F1 213F1CEPHYTEN177_S157_R1.flt_(paired)_contig_225, whole genome shotgun sequence (3523 bp)
Overview 1 RT 1: 2184-3338 bp Neighborhood of RT #1 [2184, 3430] RVT-GII Feature: gene Location: 2184-2861 bp Feature: gene Location: 2876-3052 bp Feature: gene Location: 3116-3430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3236-3338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 23 6-3 3 3 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACZNV010000041.1 Escherichia coli strain 213F1 213F1CEPHYTEN177_S157_R1.flt_(paired)_contig_41, whole genome shotgun sequence (17786 bp)
Overview 1 RT 1: 1-2921 bp Neighborhood of RT #1 [1, 3088] RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: gene Location: 2333-2509 bp Feature: domain Description: PHA02517 Location: 2336-2438 bp Feature: domain Description: PHA02517 Location: 2336-24 38 bp Feature: gene Location: 2675-3088 bp Feature: domain Description: COG2085 Location: 2774-2921 bp Feature: domain Description: COG2085 Location: 2774 -2921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG2085 (Predicted dinucleotide-binding enzyme )

Seq: JACZNV010000052.1 Escherichia coli strain 213F1 213F1CEPHYTEN177_S157_R1.flt_(paired)_contig_52, whole genome shotgun sequence (2383 bp)
Overview 1 RT 1: 2-2227 bp Neighborhood of RT #1 [2, 2262] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-145 bp Feature: gene Location: 595-2262 bp Feature: domain Description: RVT_N Location: 643-880 bp Feature: domain Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-15 73 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 1624-185 8 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)