myRT

myRT report for GCA_014862865.1_ASM1486286v1

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Seq: JACZNR010000049.1 Escherichia coli strain 208D1 208D1CEPHYTEN173_S153_R1.flt_(paired)-1_contig_49, whole genome shotgun sequence (56743 bp)
Overview 1 RT 1: 24530-28866 bp Neighborhood of RT #1 [24530, 28874] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 24530-25435 bp Feature: gene Location: 25693-25890 bp Feature: gene Location: 25921-26460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26251-26329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26251 -26329 bp Feature: gene Location: 26488-27009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26494-26776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26494-26776 bp Feature: domain Description: GIIM Note: maturase Location: 26824-27004 bp Feature: domain Description: GIIM Note: maturase Location: 26824-27004 bp Feature: gene Location: 27384-27572 bp Feature: gene Location: 27612-28874 bp Feature: domain Description: YesM Location: 28125-28866 bp Feature: domain Description: YesM Location: 281 25-28866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: JACZNR010000083.1 Escherichia coli strain 208D1 208D1CEPHYTEN173_S153_R1.flt_(paired)-1_contig_83, whole genome shotgun sequence (17786 bp)
Overview 1 RT 1: 14699-17783 bp Neighborhood of RT #1 [14699, 17783] COG2085 PHA02517 RVT-GII GIIM Feature: gene Location: 14699-15112 bp Feature: domain Description: COG2085 Location: 14798-14945 bp Feature: domain Description: COG2 085 Location: 14798-14945 bp Feature: gene Location: 15278-15454 bp Feature: domain Description: PHA02517 Location: 15281-15383 bp Feature: domain Description: PHA02 517 Location: 152 81-15383 bp Feature: gene Location: 15607-17130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15880-16612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15880-16612 bp Feature: domain Description: GIIM Note: maturase Location: 16687-16885 bp Feature: domain Description: GIIM Note: maturase Location: 16687-16885 bp Feature: gene Location: 17424-17783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2085 (Predicted dinucleotide-binding enzyme ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JACZNR010000009.1 Escherichia coli strain 208D1 208D1CEPHYTEN173_S153_R1.flt_(paired)-1_contig_9, whole genome shotgun sequence (110645 bp)
Overview 1 RT 1: 22151-28394 bp Neighborhood of RT #1 [22151, 28531] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22151-22417 bp Feature: domain Description: Phage_integrase Location: 22217-22313 bp Feature: domain Description: Phage_integrase Location: 22217-223 13 bp Feature: gene Location: 22500-22970 bp Feature: gene Location: 23317-26526 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23845-24334 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23 845-243 3 4 bp Feature: domain Description: nitrilase Location: 25840-26437 bp Feature: domain Description: nitrilase Location: 25840-2643 7 bp Feature: gene Location: 26821-27624 bp Feature: domain Description: AbiEi_3_N Location: 26854-27115 bp Feature: domain Description: AbiEi_3 _N Location: 26854-27115 bp Feature: domain Description: AbiEi_3 Location: 27127-27583 bp Feature: domain Description: AbiEi_3 Location: 27127-27583 bp Feature: gene Location: 27611-28531 bp Feature: domain Description: AbiEii Location: 27653-28394 bp Feature: domain Description: AbiEii Location: 27653 -283 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)