myRT

myRT report for GCA_014862905.1_ASM1486290v1

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Seq: JACZNM010000135.1 Escherichia coli strain 203I8 203I8CEPHYTEN169_S149_R1.flt_(paired)_contig_135, whole genome shotgun sequence (3057 bp)
Overview 1 RT 1: 1718-2872 bp Neighborhood of RT #1 [1718, 2964] RVT-GII Feature: gene Location: 1718-2395 bp Feature: gene Location: 2410-2586 bp Feature: gene Location: 2650-2964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2770-2872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2770-2872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACZNM010000016.1 Escherichia coli strain 203I8 203I8CEPHYTEN169_S149_R1.flt_(paired)_contig_16, whole genome shotgun sequence (47111 bp)
Overview 1 RT 1: 24564-27619 bp Neighborhood of RT #1 [24564, 27619] RVT-GII RVT-GII GIIM Feature: gene Location: 24564-25469 bp Feature: gene Location: 25727-25924 bp Feature: gene Location: 25955-26494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26285-26363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 62 85-2 6363 bp Feature: gene Location: 26522-27043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26528-26810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 652 8-2 6810 bp Feature: domain Description: GIIM Note: maturase Location: 26858-27038 bp Feature: domain Description: GIIM Note: maturase Location: 2 6858-2 7038 bp Feature: gene Location: 27142-27321 bp Feature: gene Location: 27431-27619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACZNM010000167.1 Escherichia coli strain 203I8 203I8CEPHYTEN169_S149_R1.flt_(paired)_contig_167, whole genome shotgun sequence (17786 bp)
Overview 1 RT 1: 14699-17783 bp Neighborhood of RT #1 [14699, 17783] COG2085 PHA02517 RVT-GII GIIM Feature: gene Location: 14699-15112 bp Feature: domain Description: COG2085 Location: 14798-14945 bp Feature: domain Description: COG2085 Location: 14798-14945 bp Feature: gene Location: 15278-15454 bp Feature: domain Description: PHA02517 Location: 15281-15383 bp Feature: domain Description: PHA02517 Location: 15281-153 83 bp Feature: gene Location: 15607-17130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15880-16612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15880-16612 bp Feature: domain Description: GIIM Note: maturase Location: 16687-16885 bp Feature: domain Description: GIIM Note: maturase Location: 16687-16885 bp Feature: gene Location: 17424-17783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2085 (Predicted dinucleotide-binding enzyme ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JACZNM010000021.1 Escherichia coli strain 203I8 203I8CEPHYTEN169_S149_R1.flt_(paired)_contig_21, whole genome shotgun sequence (110645 bp)
Overview 1 RT 1: 22151-28394 bp Neighborhood of RT #1 [22151, 28531] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22151-22417 bp Feature: domain Description: Phage_integrase Location: 22217-22313 bp Feature: domain Description: Phage_integrase Location: 22217-22313 bp Feature: gene Location: 22500-22970 bp Feature: gene Location: 23317-26526 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23845-24334 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2384 5-24 334 bp Feature: domain Description: nitrilase Location: 25840-26437 bp Feature: domain Description: nitrilase Location: 2584 0-264 37 bp Feature: gene Location: 26821-27624 bp Feature: domain Description: AbiEi_3_N Location: 26854-27115 bp Feature: domain Description: AbiEi_3_N Location: 26854 -27115 bp Feature: domain Description: AbiEi_3 Location: 27127-27583 bp Feature: domain Description: AbiEi_3 Location: 27127-27583 bp Feature: gene Location: 27611-28531 bp Feature: domain Description: AbiEii Location: 27653-28394 bp Feature: domain Description: AbiEii Location: 27653-28394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)