myRT

myRT report for GCA_014862915.1_ASM1486291v1

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Seq: JACZNN010000102.1 Escherichia coli strain 204H5 204H5CEPHYTEN198_S17_R1.flt_(paired)_contig_102, whole genome shotgun sequence (10191 bp)
Overview 1 RT 1: 7169-10188 bp Neighborhood of RT #1 [7169, 10188] RVT-GII RVT-GII GIIM Feature: gene Location: 7169-8074 bp Feature: gene Location: 8212-8403 bp Feature: gene Location: 8560-9099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8890-8968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8890-8968 bp Feature: gene Location: 9127-9648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9133-9415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 33-941 5 bp Feature: domain Description: GIIM Note: maturase Location: 9463-9643 bp Feature: domain Description: GIIM Note: maturase Location: 9463-9643 bp Feature: gene Location: 9747-9926 bp Feature: gene Location: 10036-10188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACZNN010000131.1 Escherichia coli strain 204H5 204H5CEPHYTEN198_S17_R1.flt_(paired)_contig_131, whole genome shotgun sequence (17743 bp)
Overview 1 RT 1: 14656-17740 bp Neighborhood of RT #1 [14656, 17740] COG2085 PHA02517 RVT-GII GIIM Feature: gene Location: 14656-15069 bp Feature: domain Description: COG2085 Location: 14755-14902 bp Feature: domain Description: COG2 085 Location: 14755-14902 bp Feature: gene Location: 15235-15411 bp Feature: domain Description: PHA02517 Location: 15238-15340 bp Feature: domain Description: PHA02 517 Location: 152 38-15340 bp Feature: gene Location: 15564-17087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15837-16569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15837-16569 bp Feature: domain Description: GIIM Note: maturase Location: 16644-16842 bp Feature: domain Description: GIIM Note: maturase Location: 16644-16842 bp Feature: gene Location: 17381-17740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2085 (Predicted dinucleotide-binding enzyme ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JACZNN010000148.1 Escherichia coli strain 204H5 204H5CEPHYTEN198_S17_R1.flt_(paired)_contig_148, whole genome shotgun sequence (3124 bp)
Overview 1 RT 1: 1785-2939 bp Neighborhood of RT #1 [1785, 3031] RVT-GII Feature: gene Location: 1785-2462 bp Feature: gene Location: 2477-2653 bp Feature: gene Location: 2717-3031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2837-2939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283 7-293 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACZNN010000008.1 Escherichia coli strain 204H5 204H5CEPHYTEN198_S17_R1.flt_(paired)_contig_8, whole genome shotgun sequence (131346 bp)
Overview 1 RT 1: 22151-28394 bp Neighborhood of RT #1 [22151, 28531] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22151-22417 bp Feature: domain Description: Phage_integrase Location: 22217-22313 bp Feature: domain Description: Phage_integrase Location: 22217-22313 bp Feature: gene Location: 22500-22970 bp Feature: gene Location: 23317-26526 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23845-24334 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2384 5-24 334 bp Feature: domain Description: nitrilase Location: 25840-26437 bp Feature: domain Description: nitrilase Location: 2584 0-264 37 bp Feature: gene Location: 26821-27624 bp Feature: domain Description: AbiEi_3_N Location: 26854-27115 bp Feature: domain Description: AbiEi_3_N Location: 26854 -27115 bp Feature: domain Description: AbiEi_3 Location: 27127-27583 bp Feature: domain Description: AbiEi_3 Location: 27127-27583 bp Feature: gene Location: 27611-28531 bp Feature: domain Description: AbiEii Location: 27653-28394 bp Feature: domain Description: AbiEii Location: 27653-28394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)