myRT

myRT report for GCA_014863005.1_ASM1486300v1

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Seq: JACZNJ010000012.1 Escherichia coli strain 201J10 201J10CEPHYTEN195_S14_R1.flt_(paired)_contig_12, whole genome shotgun sequence (27754 bp)
Overview 1 RT 1: 5244-8309 bp Neighborhood of RT #1 [5244, 8309] RVT-GII GIIM RVT-GII Feature: gene Location: 5244-5414 bp Feature: gene Location: 5552-5731 bp Feature: gene Location: 5830-6351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5836-6118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5836-61 1 8 bp Feature: domain Description: GIIM Note: maturase Location: 6166-6346 bp Feature: domain Description: GIIM Note: maturase Location: 61 66-6346 bp Feature: gene Location: 6379-6918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6709-6787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6709-6787 bp Feature: gene Location: 6949-7146 bp Feature: gene Location: 7404-8309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACZNJ010000156.1 Escherichia coli strain 201J10 201J10CEPHYTEN195_S14_R1.flt_(paired)_contig_156, whole genome shotgun sequence (12023 bp)
Overview 1 RT 1: 1-2921 bp Neighborhood of RT #1 [1, 3088] RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: gene Location: 2333-2509 bp Feature: domain Description: PHA02517 Location: 2336-2438 bp Feature: domain Description: PHA02 517 Location: 2 336-2 438 bp Feature: gene Location: 2675-3088 bp Feature: domain Description: COG2085 Location: 2774-2921 bp Feature: domain Description: COG2 085 Location: 2 774-2 92 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG2085 (Predicted dinucleotide-binding enzyme )

Seq: JACZNJ010000024.1 Escherichia coli strain 201J10 201J10CEPHYTEN195_S14_R1.flt_(paired)_contig_24, whole genome shotgun sequence (46545 bp)
Overview 1 RT 1: 20930-28631 bp Neighborhood of RT #1 [20930, 28768] proA RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 20930-22183 bp Feature: domain Description: proA Location: 20957-22148 bp Feature: domain Description: proA Location: 20957-22148 bp Feature: gene Location: 22737-23207 bp Feature: gene Location: 23554-26763 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24082-24571 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24082-24571 bp Feature: domain Description: nitrilase Location: 26077-26674 bp Feature: domain Description: nitrilase Location: 26077-26674 bp Feature: gene Location: 27058-27861 bp Feature: domain Description: AbiEi_3_N Location: 27091-27352 bp Feature: domain Description: AbiEi_3 _N Location: 27091-273 52 bp Feature: domain Description: AbiEi_3 Location: 27364-27820 bp Feature: domain Description: AbiEi_3 Location: 273 64-27820 bp Feature: gene Location: 27848-28768 bp Feature: domain Description: AbiEii Location: 27890-28631 bp Feature: domain Description: AbiEii Location: 27890-2863 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)