myRT

myRT report for GCA_014863085.1_ASM1486308v1

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Seq: JACZNH010000021.1 Escherichia coli strain 201G10 201G10CEPHYTEN194_S13_R1.flt_(paired)_contig_21, whole genome shotgun sequence (12023 bp)
Overview 1 RT 1: 8936-12020 bp Neighborhood of RT #1 [8936, 12020] COG2085 PHA02517 RVT-GII GIIM Feature: gene Location: 8936-9349 bp Feature: domain Description: COG2085 Location: 9035-9182 bp Feature: domain Description: COG2085 Location: 9035-91 82 bp Feature: gene Location: 9515-9691 bp Feature: domain Description: PHA02517 Location: 9518-9620 bp Feature: domain Description: PHA0251 7 Location: 951 8-9620 bp Feature: gene Location: 9844-11367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10117-10849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 1 7-1 0849 bp Feature: domain Description: GIIM Note: maturase Location: 10924-11122 bp Feature: domain Description: GIIM Note: maturase Location: 1 0924-1 1 1 22 bp Feature: gene Location: 11661-12020 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2085 (Predicted dinucleotide-binding enzyme ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JACZNH010000213.1 Escherichia coli strain 201G10 201G10CEPHYTEN194_S13_R1.flt_(paired)_contig_213, whole genome shotgun sequence (3173 bp)
Overview 1 RT 1: 1834-2988 bp Neighborhood of RT #1 [1834, 3080] RVT-GII Feature: gene Location: 1834-2511 bp Feature: gene Location: 2526-2702 bp Feature: gene Location: 2766-3080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2886-2988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 886-2 988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACZNH010000022.1 Escherichia coli strain 201G10 201G10CEPHYTEN194_S13_R1.flt_(paired)_contig_22, whole genome shotgun sequence (34571 bp)
Overview 1 RT 1: 24564-27619 bp Neighborhood of RT #1 [24564, 27619] RVT-GII RVT-GII GIIM Feature: gene Location: 24564-25469 bp Feature: gene Location: 25607-25798 bp Feature: gene Location: 25955-26494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26285-26363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26285-263 63 bp Feature: gene Location: 26522-27043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26528-26810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26528-26810 bp Feature: domain Description: GIIM Note: maturase Location: 26858-27038 bp Feature: domain Description: GIIM Note: maturase Location: 26858-2703 8 bp Feature: gene Location: 27142-27321 bp Feature: gene Location: 27431-27619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACZNH010000054.1 Escherichia coli strain 201G10 201G10CEPHYTEN194_S13_R1.flt_(paired)_contig_54, whole genome shotgun sequence (97058 bp)
Overview 1 RT 1: 8565-14808 bp Neighborhood of RT #1 [8565, 14945] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 8565-8831 bp Feature: domain Description: Phage_integrase Location: 8631-8727 bp Feature: domain Description: Phage_integrase Location: 8631-8727 bp Feature: gene Location: 8914-9384 bp Feature: gene Location: 9731-12940 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 10259-10748 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 10259-1074 8 bp Feature: domain Description: nitrilase Location: 12254-12851 bp Feature: domain Description: nitrilase Location: 12254 -12851 bp Feature: gene Location: 13235-14038 bp Feature: domain Description: AbiEi_3_N Location: 13268-13529 bp Feature: domain Description: AbiEi_3_N Location: 13268-13529 bp Feature: domain Description: AbiEi_3 Location: 13541-13997 bp Feature: domain Description: AbiEi_3 Location: 1354 1-13997 bp Feature: gene Location: 14025-14945 bp Feature: domain Description: AbiEii Location: 14067-14808 bp Feature: domain Description: AbiEii Location: 14 067-14 808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)