myRT

myRT report for GCA_014863165.1_ASM1486316v1

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Seq: JACZNE010000110.1 Escherichia coli strain 200D2 200D2CEPHYTEN191_S10_R1.flt_(paired)_contig_110, whole genome shotgun sequence (32815 bp)
Overview 1 RT 1: 10273-13338 bp Neighborhood of RT #1 [10273, 13338] RVT-GII GIIM RVT-GII Feature: gene Location: 10273-10443 bp Feature: gene Location: 10581-10760 bp Feature: gene Location: 10859-11380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10865-11147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0865-1 1 1 47 bp Feature: domain Description: GIIM Note: maturase Location: 11195-11375 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 95-1 1 375 bp Feature: gene Location: 11408-11947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11738-11816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 738-1 1 81 6 bp Feature: gene Location: 11978-12175 bp Feature: gene Location: 12433-13338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACZNE010000127.1 Escherichia coli strain 200D2 200D2CEPHYTEN191_S10_R1.flt_(paired)_contig_127, whole genome shotgun sequence (17407 bp)
Overview 1 RT 1: 14320-17404 bp Neighborhood of RT #1 [14320, 17404] COG2085 PHA02517 RVT-GII GIIM Feature: gene Location: 14320-14733 bp Feature: domain Description: COG2085 Location: 14419-14566 bp Feature: domain Description: COG2 085 Location: 14419-14566 bp Feature: gene Location: 14899-15075 bp Feature: domain Description: PHA02517 Location: 14902-15004 bp Feature: domain Description: PHA02 517 Location: 14902 -15004 bp Feature: gene Location: 15228-16751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15501-16233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15501-162 33 bp Feature: domain Description: GIIM Note: maturase Location: 16308-16506 bp Feature: domain Description: GIIM Note: maturase Location: 16308-16506 bp Feature: gene Location: 17045-17404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2085 (Predicted dinucleotide-binding enzyme ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JACZNE010000032.1 Escherichia coli strain 200D2 200D2CEPHYTEN191_S10_R1.flt_(paired)_contig_32, whole genome shotgun sequence (131198 bp)
Overview 1 RT 1: 22151-28394 bp Neighborhood of RT #1 [22151, 28531] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22151-22417 bp Feature: domain Description: Phage_integrase Location: 22217-22313 bp Feature: domain Description: Phage_integrase Location: 22217-223 13 bp Feature: gene Location: 22500-22970 bp Feature: gene Location: 23317-26526 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23845-24334 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23 845-243 3 4 bp Feature: domain Description: nitrilase Location: 25840-26437 bp Feature: domain Description: nitrilase Location: 25840-2643 7 bp Feature: gene Location: 26821-27624 bp Feature: domain Description: AbiEi_3_N Location: 26854-27115 bp Feature: domain Description: AbiEi_3 _N Location: 26854-27115 bp Feature: domain Description: AbiEi_3 Location: 27127-27583 bp Feature: domain Description: AbiEi_3 Location: 27127-27583 bp Feature: gene Location: 27611-28531 bp Feature: domain Description: AbiEii Location: 27653-28394 bp Feature: domain Description: AbiEii Location: 27653 -283 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)