myRT

myRT report for GCA_014863185.1_ASM1486318v1

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Seq: JACZNC010000119.1 Escherichia coli strain 197H8 197H8_S176_R1_(paired)_contig_119, whole genome shotgun sequence (31170 bp)
Overview 1 RT 1: 3907-8198 bp Neighborhood of RT #1 [3907, 8198] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 3907-5169 bp Feature: domain Description: YesM Location: 4420-5161 bp Feature: domain Description: YesM Location: 4420-51 61 bp Feature: gene Location: 5199-5369 bp Feature: gene Location: 5719-6240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5725-6007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5725-6007 bp Feature: domain Description: GIIM Note: maturase Location: 6055-6235 bp Feature: domain Description: GIIM Note: maturase Location: 6055-6235 bp Feature: gene Location: 6268-6807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6598-6676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6598-6676 bp Feature: gene Location: 6838-7035 bp Feature: gene Location: 7293-8198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JACZNC010000142.1 Escherichia coli strain 197H8 197H8_S176_R1_(paired)_contig_142, whole genome shotgun sequence (16699 bp)
Overview 1 RT 1: 8826-11740 bp Neighborhood of RT #1 [8826, 11805] RVT-GII GIIM PHA02517 Feature: gene Location: 8826-8969 bp Feature: gene Location: 8994-9197 bp Feature: gene Location: 9265-10788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9538-10270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9538-102 70 bp Feature: domain Description: GIIM Note: maturase Location: 10345-10543 bp Feature: domain Description: GIIM Note: maturase Location: 10345-10543 bp Feature: gene Location: 10742-11167 bp Feature: gene Location: 11380-11805 bp Feature: domain Description: PHA02517 Location: 11404-11740 bp Feature: domain Description: PHA02 517 Location: 11404-11740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JACZNC010000016.1 Escherichia coli strain 197H8 197H8_S176_R1_(paired)_contig_16, whole genome shotgun sequence (72789 bp)
Overview 1 RT 1: 70032-72692 bp Neighborhood of RT #1 [70032, 72787] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 70032-70265 bp Feature: domain Description: DUF905 Location: 70062-70260 bp Feature: domain Description: DUF905 Location: 70062-70260 bp Feature: gene Location: 70323-70763 bp Feature: domain Description: PRK13732 Location: 70329-70761 bp Feature: domain Description: PRK13 73 2 Location: 703 29-70761 bp Feature: gene Location: 70958-72787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71153-71984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71153 -71984 bp Feature: domain Description: Intron_maturas2 Location: 72098-72356 bp Feature: domain Description: Intron_maturas2 Location: 72098-723 56 bp Feature: domain Description: HNHc Note: nucleases Location: 72530-72692 bp Feature: domain Description: HNHc Note: nucleases Location: 7253 0-72692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JACZNC010000080.1 Escherichia coli strain 197H8 197H8_S176_R1_(paired)_contig_80, whole genome shotgun sequence (131313 bp)
Overview 1 RT 1: 22151-28394 bp Neighborhood of RT #1 [22151, 28531] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22151-22417 bp Feature: domain Description: Phage_integrase Location: 22217-22313 bp Feature: domain Description: Phage_integrase Location: 22217-22313 bp Feature: gene Location: 22500-22970 bp Feature: gene Location: 23317-26526 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23845-24334 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2384 5-24 334 bp Feature: domain Description: nitrilase Location: 25840-26437 bp Feature: domain Description: nitrilase Location: 2584 0-264 37 bp Feature: gene Location: 26821-27624 bp Feature: domain Description: AbiEi_3_N Location: 26854-27115 bp Feature: domain Description: AbiEi_3_N Location: 26854 -27115 bp Feature: domain Description: AbiEi_3 Location: 27127-27583 bp Feature: domain Description: AbiEi_3 Location: 27127-27583 bp Feature: gene Location: 27611-28531 bp Feature: domain Description: AbiEii Location: 27653-28394 bp Feature: domain Description: AbiEii Location: 27653-28394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)