myRT

myRT report for GCA_014863215.1_ASM1486321v1

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Seq: JACZNB010000129.1 Escherichia coli strain 197C10 197C10_S185_R1_(paired)_contig_129, whole genome shotgun sequence (37447 bp)
Overview 1 RT 1: 19889-22944 bp Neighborhood of RT #1 [19889, 22944] RVT-GII RVT-GII GIIM Feature: gene Location: 19889-20794 bp Feature: gene Location: 20932-21123 bp Feature: gene Location: 21280-21819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21610-21688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 61 0-21 688 bp Feature: gene Location: 21847-22368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21853-22135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 853-221 35 bp Feature: domain Description: GIIM Note: maturase Location: 22183-22363 bp Feature: domain Description: GIIM Note: maturase Location: 221 83-22363 bp Feature: gene Location: 22467-22646 bp Feature: gene Location: 22756-22944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACZNB010000031.1 Escherichia coli strain 197C10 197C10_S185_R1_(paired)_contig_31, whole genome shotgun sequence (46562 bp)
Overview 1 RT 1: 18031-24062 bp Neighborhood of RT #1 [18031, 24062] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 18031-18951 bp Feature: domain Description: AbiEii Location: 18073-18814 bp Feature: domain Description: AbiEii Location: 18073-18814 bp Feature: gene Location: 18938-19741 bp Feature: domain Description: AbiEi_3_N Location: 18971-19232 bp Feature: domain Description: AbiEi_3_N Location: 18971-192 32 bp Feature: domain Description: AbiEi_3 Location: 19244-19700 bp Feature: domain Description: AbiEi_3 Location: 192 44-19700 bp Feature: gene Location: 20036-23245 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 20564-21053 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 0564-2 1053 bp Feature: domain Description: nitrilase Location: 22559-23156 bp Feature: domain Description: nitrilase Location: 2 2 559-2 3156 bp Feature: gene Location: 23406-23546 bp Feature: domain Description: Phage_ASH Location: 23433-23526 bp Feature: domain Description: Phage_ASH Location: 2 3433-2 352 6 bp Feature: gene Location: 23592-24062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: JACZNB010000044.1 Escherichia coli strain 197C10 197C10_S185_R1_(paired)_contig_44, whole genome shotgun sequence (18214 bp)
Overview 1 RT 1: 1-2921 bp Neighborhood of RT #1 [1, 3088] RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Feature: gene Location: 2333-2509 bp Feature: domain Description: PHA02517 Location: 2336-2438 bp Feature: domain Description: PHA02517 Location: 23 3 6-243 8 bp Feature: gene Location: 2675-3088 bp Feature: domain Description: COG2085 Location: 2774-2921 bp Feature: domain Description: COG2085 Location: 2774-2921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG2085 (Predicted dinucleotide-binding enzyme )