myRT

myRT report for GCA_014864805.1_ASM1486480v1

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Seq: WHAJ01000342.1 (4109 bp)
Overview 1 RT 1: 177-2234 bp Neighborhood of RT #1 [177, 2236] RVT-GII BaeS NosY Feature: gene Location: 177-356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 207-279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 207-279 bp Feature: gene Location: 512-1420 bp Feature: domain Description: BaeS Location: 533-1361 bp Feature: domain Description: BaeS Location: 533-1 361 bp Feature: gene Location: 1424-2236 bp Feature: domain Description: NosY Location: 1433-2234 bp Feature: domain Description: NosY Location: 1 433-2234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, BaeS (COG0642), NosY (COG1277)

Seq: WHAJ01000446.1 (2492 bp)
Overview 1 RT 1: 430-2476 bp Neighborhood of RT #1 [430, 2490] RVT-GII Intron_maturas2 HNHc Phage_portal Feature: gene Location: 430-2235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 697-1507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 697-1507 bp Feature: domain Description: Intron_maturas2 Location: 1588-1870 bp Feature: domain Description: Intron_maturas2 Location: 1588-1870 bp Feature: domain Description: HNHc Note: nucleases Location: 2050-2197 bp Feature: domain Description: HNHc Note: nucleases Location: 2 050-2 197 bp Feature: gene Location: 2248-2490 bp Feature: domain Description: Phage_portal Location: 2326-2476 bp Feature: domain Description: Phage_portal Location: 2 32 6-2 476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Phage_portal (pfam04860)

Seq: WHAJ01000437.1 (2546 bp)
Overview 1 RT 1: 2-2330 bp Neighborhood of RT #1 [2, 2449] RVT-GII HNHc Feature: gene Location: 2-127 bp Feature: gene Location: 252-401 bp Feature: gene Location: 578-2449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 899-1634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 899-163 4 bp Feature: domain Description: HNHc Note: nucleases Location: 2189-2330 bp Feature: domain Description: HNHc Note: nucleases Location: 2189-23 3 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: WHAJ01000105.1 (13605 bp)
Overview 1 RT 1: 10925-12991 bp Neighborhood of RT #1 [10925, 13365] DUF4352 Phage_XkdX RVT-DGRs Feature: gene Location: 10925-11806 bp Feature: domain Description: DUF4352 Location: 11468-11774 bp Feature: domain Description: DUF4 352 Location: 114 68-11774 bp Feature: gene Location: 11834-11968 bp Feature: domain Description: Phage_XkdX Location: 11855-11957 bp Feature: domain Description: Phage_XkdX Location: 11855-11957 bp Feature: gene Location: 12220-13365 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12430-12991 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 124 30-12991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4352 (pfam11611), Phage_XkdX (pfam09693), RVT-DGRs

Seq: WHAJ01000447.1 (2473 bp)
Overview 1 RT 1: 1-2471 bp Neighborhood of RT #1 [1, 2471] RVT_N RVT-GII GIIM Feature: gene Location: 1-225 bp Feature: gene Location: 615-2285 bp Feature: domain Description: RVT_N Location: 660-903 bp Feature: domain Description: RVT_N Location: 660-903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-15 96 bp Feature: domain Description: GIIM Note: maturase Location: 1650-1881 bp Feature: domain Description: GIIM Note: maturase Location: 165 0-1881 bp Feature: gene Location: 2286-2471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WHAJ01000528.1 (1778 bp)
Overview 1 RT 1: 270-1359 bp Neighborhood of RT #1 [270, 1574] RVT-GII GIIM Feature: gene Location: 270-1574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471-1089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471-1089 bp Feature: domain Description: GIIM Note: maturase Location: 1143-1359 bp Feature: domain Description: GIIM Note: maturase Location: 1143-1359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WHAJ01000039.1 (23204 bp)
Overview 1 RT 1: 414-3968 bp Neighborhood of RT #1 [414, 3976] Cas2_I_II_III RVT-CRISPR cas1_HMARI Cas1_I-B DUF1887 Feature: gene Location: 414-686 bp Feature: domain Description: Cas2_I_II_III Location: 435-657 bp Feature: domain Description: Cas2_I_II_III Location: 435-657 bp Feature: gene Location: 699-2081 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 909-1494 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 909-1494 bp Feature: domain Description: cas1_HMARI Location: 1623-2031 bp Feature: domain Description: cas1_HMARI Location: 1623-2031 bp Feature: gene Location: 2100-2252 bp Feature: domain Description: Cas1_I-B Location: 2103-2244 bp Feature: domain Description: Cas1_I-B Location: 2103-2244 bp Feature: gene Location: 2786-3976 bp Feature: domain Description: DUF1887 Location: 2867-3968 bp Feature: domain Description: DUF1887 Location: 2867 -3968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, cas1_HMARI (TIGR03641), Cas1_I-B (cd09722), DUF1887 (pfam09002)