myRT

myRT report for GCA_014866135.1_ASM1486613v1

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Seq: WGXT01000106.1 Agathobacter sp. isolate COPD150 SB1790_bin.1_contig_106, whole genome shotgun sequence (5951 bp)
Overview 1 RT 1: 2087-5269 bp Neighborhood of RT #1 [2087, 5269] RVT-Retrons Feature: gene Location: 2087-2362 bp Feature: gene Location: 2349-2612 bp Feature: gene Location: 2708-3715 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2918-3476 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 291 8-3476 bp Feature: gene Location: 3811-4083 bp Feature: gene Location: 4052-5269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: WGXT01000178.1 Agathobacter sp. isolate COPD150 SB1790_bin.1_contig_178, whole genome shotgun sequence (2391 bp)
Overview 1 RT 1: 1-2377 bp Neighborhood of RT #1 [1, 2388] RVT-GII GIIM SDR_a1 Feature: gene Location: 1-150 bp Feature: gene Location: 154-327 bp Feature: gene Location: 378-1676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 633-1326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 633-132 6 bp Feature: domain Description: GIIM Note: maturase Location: 1386-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1386-1605 bp Feature: gene Location: 1786-2388 bp Feature: domain Description: SDR_a1 Location: 1792-2377 bp Feature: domain Description: SDR_a1 Location: 1792 -2 377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), SDR_a1 (cd05265)

Seq: WGXT01000019.1 Agathobacter sp. isolate COPD150 SB1790_bin.1_contig_19, whole genome shotgun sequence (40119 bp)
Overview 1 RT 1: 35783-40116 bp Neighborhood of RT #1 [35783, 40116] FucI PurR RVT-GII GIIM Feature: gene Location: 35783-37267 bp Feature: domain Description: FucI Location: 35786-37211 bp Feature: domain Description: FucI Location: 3 5786-3 7211 bp Feature: gene Location: 37466-38524 bp Feature: domain Description: PurR Location: 37478-38522 bp Feature: domain Description: PurR Location: 3 7478-3 8522 bp Feature: gene Location: 38664-39947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38874-39489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 8874-3 9489 bp Feature: domain Description: GIIM Note: maturase Location: 39549-39777 bp Feature: domain Description: GIIM Note: maturase Location: 3 9549-3 9777 bp Feature: gene Location: 39934-40116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FucI (COG2407), PurR (COG1609), RVT-GII, GIIM (pfam08388)

Seq: WGXT01000003.1 Agathobacter sp. isolate COPD150 SB1790_bin.1_contig_3, whole genome shotgun sequence (82973 bp)
Overview 1 RT 1: 3-5567 bp Neighborhood of RT #1 [3, 5567] RVT-UG5 nitrilase N6_Mtase RMtype1_S_SonII-TRD2-CR2_like Feature: gene Location: 3-2762 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 267-741 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 267-74 1 bp Feature: domain Description: nitrilase Location: 2007-2688 bp Feature: domain Description: nitrilase Location: 2007-2688 bp Feature: gene Location: 3197-5047 bp Feature: domain Description: N6_Mtase Location: 3659-4439 bp Feature: domain Description: N6_Mtase Location: 3659-4 4 39 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 4472-5015 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 4 4 72-5015 bp Feature: gene Location: 5040-5567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), N6_Mtase (pfam02384), RMtype1_S_SonII-TRD2-CR2_like (cd17246)

Seq: WGXT01000031.1 Agathobacter sp. isolate COPD150 SB1790_bin.1_contig_31, whole genome shotgun sequence (28111 bp)
Overview 1 RT 1: 16776-21051 bp Neighborhood of RT #1 [16776, 21051] Trypsin_2 RVT-UG14 RVT-UG14 Feature: gene Location: 16776-17498 bp Feature: domain Description: Trypsin_2 Location: 16857-17346 bp Feature: domain Description: Trypsin_2 Location: 1685 7-17346 bp Feature: gene Location: 17479-18000 bp Feature: gene Location: 18518-20086 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 18917-18977 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 18917-18977 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 18995-19265 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 18995 -19265 bp Feature: gene Location: 20244-20429 bp Feature: gene Location: 20446-21051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Trypsin_2 (pfam13365), RVT-UG14