myRT

myRT report for GCA_014879865.1_ASM1487986v1

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Seq: JACSRG010000854.1 (2851 bp)
Overview 1 RT 1: 2-2197 bp Neighborhood of RT #1 [2, 2265] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2-196 bp Feature: gene Location: 200-427 bp Feature: gene Location: 424-2265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 688-1477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 688-1 477 bp Feature: domain Description: Intron_maturas2 Location: 1603-1834 bp Feature: domain Description: Intron_maturas2 Location: 1 603-1 834 bp Feature: domain Description: HNHc Note: nucleases Location: 2002-2197 bp Feature: domain Description: HNHc Note: nucleases Location: 2002-21 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JACSRG010000194.1 (8562 bp)
Overview 1 RT 1: 1411-4709 bp Neighborhood of RT #1 [1411, 4709] DUF370 Cas1_I-II-III RVT-CRISPR Der Feature: gene Location: 1411-1674 bp Feature: domain Description: DUF370 Location: 1429-1630 bp Feature: domain Description: DUF370 Location: 142 9-1630 bp Feature: gene Location: 1723-2724 bp Feature: domain Description: Cas1_I-II-III Location: 1732-2671 bp Feature: domain Description: Cas1_I-II-III Location: 1732 -2 671 bp Feature: gene Location: 2721-3566 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2898-3501 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 898-3501 bp Feature: gene Location: 3587-4543 bp Feature: domain Description: Der Location: 3863-4100 bp Feature: domain Description: Der Location: 3863-4100 bp Feature: gene Location: 4557-4709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF370 (pfam04025), Cas1_I-II-III (cl00656), RVT-CRISPR, Der (COG1160)

Seq: JACSRG010000412.1 (14422 bp)
Overview 1 RT 1: 2-8486 bp Neighborhood of RT #1 [2, 8578] FGE-sulfatase egtB_egtB_egtB_TIGR03440 RVT-DGRs TIR_2 NACHT YfmG COG0610 Feature: gene Location: 2-259 bp Feature: domain Description: FGE-sulfatase Location: 26-230 bp Feature: domain Description: FGE-sulfatase Location: 26-23 0 bp Feature: gene Location: 136-1068 bp Feature: domain Description: egtB_egtB_egtB_TIGR03440 Location: 391-502 bp Feature: domain Description: egtB_egtB_egtB_TIGR03 440 Location: 3 91-502 bp Feature: gene Location: 1034-2128 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1250-1898 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1250-1898 bp Feature: gene Location: 2222-5353 bp Feature: domain Description: TIR_2 Location: 2264-2609 bp Feature: domain Description: TIR_2 Location: 2264-2609 bp Feature: domain Description: NACHT Location: 3002-3473 bp Feature: domain Description: NACHT Location: 3 002-3 473 bp Feature: domain Description: YfmG Location: 4334-5336 bp Feature: domain Description: YfmG Location: 43 3 4-53 3 6 bp Feature: gene Location: 5447-8578 bp Feature: domain Description: COG0610 Location: 5465-8486 bp Feature: domain Description: COG0610 Location: 5465-8486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FGE-sulfatase (pfam03781), egtB_egtB_egtB_TIGR03440, RVT-DGRs, TIR_2 (pfam13676), NACHT (pfam05729), YfmG (COG1262), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )