myRT

myRT report for GCA_900002265.1_SsymSCtVLC_01

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Seq: FR904244.1 (45848 bp)
Overview 1 RT 1: 16545-21919 bp Neighborhood of RT #1 [16545, 21919] mnmC PRK07967 RVT-GII group_II_RT_mat RVT-GII Feature: gene Location: 16545-18035 bp Feature: domain Description: mnmC Location: 16632-17889 bp Feature: domain Description: mnmC Location: 1 6632-1 7889 bp Feature: gene Location: 18558-19772 bp Feature: domain Description: PRK07967 Location: 18561-19764 bp Feature: domain Description: PRK07967 Location: 1 8561 -1 9764 bp Feature: gene Location: 20045-20659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20051-20375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20051 -20375 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 20447-20573 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 20447-20573 bp Feature: gene Location: 20684-21178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20888-21131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20888-21 1 31 bp Feature: gene Location: 21289-21432 bp Feature: gene Location: 21707-21919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mnmC (PRK01747), PRK07967 (beta-ketoacyl-ACP synthase I), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: FR904233.1 (233210 bp)
Overview 1 RT 1: 59093-62292 bp 2 RT 2: 183564-185460 bp Neighborhood of RT #1 [59093, 62292] RVT-GII Neighborhood of RT #2 [183564, 185552] PRK10760 RVT-GII group_II_RT_mat IS285 Feature: gene Location: 59093-59968 bp Feature: gene Location: 60111-60503 bp Feature: gene Location: 60406-61047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60484-61012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60484-61012 bp Feature: gene Location: 61169-61360 bp Feature: gene Location: 61417-62292 bp Feature: gene Location: 183564-183941 bp Feature: domain Description: PRK10760 Location: 183567-183915 bp Feature: domain Description: PRK10760 Location: 183567-183915 bp Feature: gene Location: 184038-184241 bp Feature: gene Location: 184258-184686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184276-184402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1842 76-184402 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 184477-184600 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 184477-184600 bp Feature: gene Location: 184696-184989 bp Feature: gene Location: 185217-185552 bp Feature: domain Description: IS285 Location: 185226-185460 bp Feature: domain Description: IS2 85 Location: 1852 2 6-185460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10760 (murein hydrolase B; Provisional), group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: FR904241.1 (67882 bp)
Overview 1 RT 1: 11820-14298 bp 2 RT 2: 64543-67702 bp Neighborhood of RT #1 [11820, 14330] group_II_RT_mat RVT-GII PHA02517 Arm-DNA-bind_3 Neighborhood of RT #2 [64543, 67731] pheA tyrA RVT-GII GIIM PRK11107 Feature: gene Location: 11820-11990 bp Feature: gene Location: 12019-12501 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 12025-12337 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 12025-123 3 7 bp Feature: gene Location: 12516-13433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12774-13233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12774-13 23 3 bp Feature: gene Location: 13472-13771 bp Feature: domain Description: PHA02517 Location: 13496-13691 bp Feature: domain Description: PHA02517 Location: 13 496-13 691 bp Feature: gene Location: 14157-14330 bp Feature: domain Description: Arm-DNA-bind_3 Location: 14166-14298 bp Feature: domain Description: Arm-DNA-bind_3 Location: 14166-14298 bp Feature: gene Location: 64543-65700 bp Feature: domain Description: pheA Location: 64546-65695 bp Feature: domain Description: pheA Location: 64546-65695 bp Feature: gene Location: 65735-65983 bp Feature: domain Description: tyrA Location: 65738-65981 bp Feature: domain Description: tyrA Location: 6573 8-65981 bp Feature: gene Location: 66055-66600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66073-66199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66073 -66199 bp Feature: domain Description: GIIM Note: maturase Location: 66280-66484 bp Feature: domain Description: GIIM Note: maturase Location: 66280-66484 bp Feature: gene Location: 66610-66903 bp Feature: gene Location: 67090-67731 bp Feature: domain Description: PRK11107 Location: 67192-67702 bp Feature: domain Description: PRK11107 Location: 67192-67702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), Arm-DNA-bind_3 (pfam13356), pheA (PRK10622), tyrA (PRK11199), GIIM (pfam08388), PRK11107 (hybrid sensory histidine kinase BarA; Provisional)

Seq: FR904235.1 (273779 bp)
Overview 1 RT 1: 225967-229704 bp Neighborhood of RT #1 [225967, 229709] DDE_Tnp_Tn3 RVT-GII HTH_29 rve PRK13972 Feature: gene Location: 225967-226935 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 225994-226870 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 225994 -226870 bp Feature: gene Location: 227167-227502 bp Feature: gene Location: 227499-228014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227703-228006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227703-228006 bp Feature: gene Location: 228109-229197 bp Feature: domain Description: HTH_29 Location: 228142-228328 bp Feature: domain Description: HTH_29 Location: 22814 2-228328 bp Feature: domain Description: rve Location: 228592-228955 bp Feature: domain Description: rve Location: 228592-228955 bp Feature: gene Location: 229503-229709 bp Feature: domain Description: PRK13972 Location: 229536-229704 bp Feature: domain Description: PRK13972 Location: 229536-229704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), RVT-GII, HTH_29 (pfam13551), rve (pfam00665), PRK13972 (GSH-dependent disulfide bond oxidoreductase; Provisional)

Seq: FR904232.1 (295796 bp)
Overview 1 RT 1: 230971-237084 bp Neighborhood of RT #1 [230971, 237084] PRK02971 Spr RVT-GII GIIM RVT-GII group_II_RT_mat RVT-GII Feature: gene Location: 230971-231339 bp Feature: domain Description: PRK02971 Location: 230977-231322 bp Feature: domain Description: PRK02971 Location: 230977-231322 bp Feature: gene Location: 231534-231941 bp Feature: domain Description: Spr Location: 231642-231921 bp Feature: domain Description: Spr Location: 231642-231921 bp Feature: gene Location: 232029-232655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232071-232254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232071-23225 4 bp Feature: domain Description: GIIM Note: maturase Location: 232335-232539 bp Feature: domain Description: GIIM Note: maturase Location: 232335 -2325 39 bp Feature: gene Location: 232711-232887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232714-232882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232714-232882 bp Feature: gene Location: 233080-233415 bp Feature: gene Location: 233635-233799 bp Feature: gene Location: 234595-234732 bp Feature: gene Location: 235155-235589 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 235191-235488 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 235 191-235 488 bp Feature: gene Location: 235637-236278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235715-236243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235 715 -236243 bp Feature: gene Location: 236181-236573 bp Feature: gene Location: 236716-237084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02971 (4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional), Spr (COG0791), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416)

Seq: FR904230.1 (343535 bp)
Overview 1 RT 1: 125629-127968 bp 2 RT 2: 248287-252644 bp Neighborhood of RT #1 [125629, 127970] rve RVT-GII glnG Neighborhood of RT #2 [248287, 252644] tyrA RVT-GII RVT-GII GIIM PRK11107 Feature: gene Location: 125629-126435 bp Feature: domain Description: rve Location: 125878-126247 bp Feature: domain Description: rve Location: 125878-126 247 bp Feature: gene Location: 126413-126724 bp Feature: gene Location: 126910-127353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127114-127348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127114-127348 bp Feature: gene Location: 127464-127607 bp Feature: gene Location: 127794-127970 bp Feature: domain Description: glnG Location: 127887-127968 bp Feature: domain Description: glnG Location: 127887-12796 8 bp Feature: gene Location: 248287-249204 bp Feature: domain Description: tyrA Location: 248290-249151 bp Feature: domain Description: tyrA Location: 248290-249151 bp Feature: gene Location: 249354-249689 bp Feature: gene Location: 249777-250181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249891-250062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249891-25006 2 bp Feature: gene Location: 250185-250808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250227-250410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250227-250410 bp Feature: domain Description: GIIM Note: maturase Location: 250491-250680 bp Feature: domain Description: GIIM Note: maturase Location: 250491-2506 80 bp Feature: gene Location: 250819-251922 bp Feature: domain Description: PRK11107 Location: 250822-251884 bp Feature: domain Description: PRK11107 Location: 250822-251884 bp Feature: gene Location: 252429-252644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-GII, glnG (PRK10923), tyrA (PRK11199), GIIM (pfam08388), PRK11107 (hybrid sensory histidine kinase BarA; Provisional)

Seq: FR904231.1 (339037 bp)
Overview 1 RT 1: 11324-14603 bp Neighborhood of RT #1 [11324, 14626] RVT-GII InsE Feature: gene Location: 11324-12196 bp Feature: gene Location: 12289-12609 bp Feature: gene Location: 12631-13131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12673-12856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1267 3-12856 bp Feature: gene Location: 13167-13682 bp Feature: gene Location: 14255-14626 bp Feature: domain Description: InsE Location: 14282-14603 bp Feature: domain Description: InsE Location: 14282-14603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963)