myRT

myRT report for GCA_900009135.2_BBR_PRJEB10991_v2

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Seq: LT797704.1 (212063 bp)
Overview 1 RT 1: 130743-139303 bp Neighborhood of RT #1 [130743, 139731] ATP-cone RNR_I NrdF RVT_N RVT-GII GIIM McrA RVT_N RVT-GII GIIM McrA RNRR2 GIY-YIG_HE_Tlr8p_PBC-V_like Feature: gene Location: 130743-133007 bp Feature: domain Description: ATP-cone Location: 130797-131049 bp Feature: domain Description: ATP-cone Location: 1 30797-1 31 049 bp Feature: domain Description: RNR_I Location: 131268-132951 bp Feature: domain Description: RNR_I Location: 1 31 268-1 32951 bp Feature: gene Location: 133046-133318 bp Feature: domain Description: NrdF Location: 133163-133298 bp Feature: domain Description: NrdF Location: 1 331 63-1 33298 bp Feature: gene Location: 133990-135756 bp Feature: domain Description: RVT_N Location: 134035-134281 bp Feature: domain Description: RVT_N Location: 1 34035-1 34281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134323-135037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 34323-1 35037 bp Feature: domain Description: GIIM Note: maturase Location: 135136-135370 bp Feature: domain Description: GIIM Note: maturase Location: 1 351 36-1 35370 bp Feature: domain Description: McrA Location: 135457-135727 bp Feature: domain Description: McrA Location: 1 35457-1 35727 bp Feature: gene Location: 136462-138237 bp Feature: domain Description: RVT_N Location: 136540-136786 bp Feature: domain Description: RVT_N Location: 1 36540-1 36786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136828-137494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36828-1 37494 bp Feature: domain Description: GIIM Note: maturase Location: 137596-137797 bp Feature: domain Description: GIIM Note: maturase Location: 1 37596-1 37797 bp Feature: domain Description: McrA Location: 137905-138175 bp Feature: domain Description: McrA Location: 1 37905-1 381 75 bp Feature: gene Location: 138481-138735 bp Feature: domain Description: RNRR2 Location: 138487-138727 bp Feature: domain Description: RNRR2 Location: 1 38487-1 38727 bp Feature: gene Location: 139000-139731 bp Feature: domain Description: GIY-YIG_HE_Tlr8p_PBC-V_like Location: 139051-139303 bp Feature: domain Description: GIY-YIG_HE_Tlr8p_PBC-V_like Location: 1 39051 -1 39303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ATP-cone (pfam03477), RNR_I (cd01679), NrdF (COG0208), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), RNRR2 (cd01049), GIY-YIG_HE_Tlr8p_PBC-V_like (cd10443)

Seq: LT797705.1 (226548 bp)
Overview 1 RT 1: 136507-147693 bp Neighborhood of RT #1 [136507, 147734] met_A_Alw26 met_A_Alw26 met_A_Alw26 DEXDc_RapA PRK04914 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 136507-141717 bp Feature: domain Description: met_A_Alw26 Location: 138451-138514 bp Feature: domain Description: met_A_Alw2 6 Location: 138451-138514 bp Feature: domain Description: met_A_Alw26 Location: 139399-139525 bp Feature: domain Description: met_A_Alw2 6 Location: 139399-13952 5 bp Feature: domain Description: met_A_Alw26 Location: 139795-140062 bp Feature: domain Description: met_A_Alw2 6 Location: 139795-140062 bp Feature: gene Location: 141717-144974 bp Feature: domain Description: DEXDc_RapA Location: 142101-142752 bp Feature: domain Description: DEXDc_RapA Location: 142 101-142 752 bp Feature: domain Description: PRK04914 Location: 143328-143895 bp Feature: domain Description: PRK04914 Location: 14332 8-143895 bp Feature: gene Location: 145320-146336 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 145578-146184 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 145578-146184 bp Feature: gene Location: 146410-147414 bp Feature: domain Description: Cas1_I-II-III Location: 146419-147376 bp Feature: domain Description: Cas1_I-II-III Location: 146419-147376 bp Feature: gene Location: 147435-147734 bp Feature: domain Description: Cas2_I_II_III Location: 147468-147693 bp Feature: domain Description: Cas2 _I_II_III Location: 147468-147693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT met_A_Alw26 (TIGR02987), DEXDc_RapA (cd18011), PRK04914 (RNA polymerase-associated protein RapA), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: LT797698.1 (2449 bp)
Overview 1 RT 1: 568-2272 bp Neighborhood of RT #1 [568, 2316] RVT_N RVT-GII GIIM McrA Feature: gene Location: 568-2316 bp Feature: domain Description: RVT_N Location: 646-892 bp Feature: domain Description: RVT_N Location: 646-892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 4-1600 bp Feature: domain Description: GIIM Note: maturase Location: 1699-1900 bp Feature: domain Description: GIIM Note: maturase Location: 1699-1900 bp Feature: domain Description: McrA Location: 2002-2272 bp Feature: domain Description: McrA Location: 2002-2272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: LT797686.1 (49236 bp)
Overview 1 RT 1: 13730-21183 bp Neighborhood of RT #1 [13730, 21185] TPR_14 TPR_14 PRK07459 RVT_N RVT-GII GIIM STKc_PknB_like KOG0272 WD40 SLH OprB Feature: gene Location: 13730-14257 bp Feature: domain Description: TPR_14 Location: 13766-13856 bp Feature: domain Description: TPR_14 Location: 13766-13856 bp Feature: domain Description: TPR_14 Location: 13880-13964 bp Feature: domain Description: TPR_14 Location: 13880-13964 bp Feature: gene Location: 14270-14488 bp Feature: domain Description: PRK07459 Location: 14273-14465 bp Feature: domain Description: PRK074 59 Location: 14 273-14 4 65 bp Feature: gene Location: 14675-16102 bp Feature: domain Description: RVT_N Location: 14708-14954 bp Feature: domain Description: RVT_N Location: 14 708-14 954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14996-15656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 996-15656 bp Feature: domain Description: GIIM Note: maturase Location: 15758-15995 bp Feature: domain Description: GIIM Note: maturase Location: 15758-15995 bp Feature: gene Location: 16956-19124 bp Feature: domain Description: STKc_PknB_like Location: 17193-17970 bp Feature: domain Description: STKc_PknB_like Location: 17193-17970 bp Feature: domain Description: KOG0272 Location: 18267-18948 bp Feature: domain Description: KOG0272 Location: 18267-1894 8 bp Feature: domain Description: WD40 Location: 18978-19092 bp Feature: domain Description: WD4 0 Location: 18978-19092 bp Feature: gene Location: 19236-21185 bp Feature: domain Description: SLH Location: 19749-19875 bp Feature: domain Description: SLH Location: 1974 9-19875 bp Feature: domain Description: OprB Location: 19947-21183 bp Feature: domain Description: OprB Location: 1994 7-21183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_14 (pfam13428), PRK07459 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), STKc_PknB_like (cd14014), KOG0272 (KOG0272, U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) ), WD40 (smart00320), SLH (pfam00395), OprB (pfam04966)

Seq: LT797783.1 (2449 bp)
Overview 1 RT 1: 568-2272 bp Neighborhood of RT #1 [568, 2316] RVT_N RVT-GII GIIM McrA Feature: gene Location: 568-2316 bp Feature: domain Description: RVT_N Location: 646-892 bp Feature: domain Description: RVT_N Location: 646-892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1600 bp Feature: domain Description: GIIM Note: maturase Location: 1699-1900 bp Feature: domain Description: GIIM Note: maturase Location: 1699-1900 bp Feature: domain Description: McrA Location: 2002-2272 bp Feature: domain Description: McrA Location: 2002-2272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: LT797708.1 (73388 bp)
Overview 1 RT 1: 42734-47980 bp Neighborhood of RT #1 [42734, 48030] PLN00020 RuBisCO_small_like RVT_N RVT-GII GIIM McrA PdxJ Ycf54 Feature: gene Location: 42734-43969 bp Feature: domain Description: PLN00020 Location: 42740-43601 bp Feature: domain Description: PLN00020 Location: 42740-436 01 bp Feature: domain Description: RuBisCO_small_like Location: 43724-43967 bp Feature: domain Description: RuBisCO_small_like Location: 43724-4396 7 bp Feature: gene Location: 44298-44465 bp Feature: gene Location: 45127-46866 bp Feature: domain Description: RVT_N Location: 45169-45415 bp Feature: domain Description: RVT_N Location: 4516 9-45415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45457-46126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45457-46 126 bp Feature: domain Description: GIIM Note: maturase Location: 46225-46426 bp Feature: domain Description: GIIM Note: maturase Location: 46 225-46 426 bp Feature: domain Description: McrA Location: 46528-46798 bp Feature: domain Description: McrA Location: 46 528-46 798 bp Feature: gene Location: 47028-47660 bp Feature: domain Description: PdxJ Location: 47034-47649 bp Feature: domain Description: PdxJ Location: 47034-476 49 bp Feature: gene Location: 47701-48030 bp Feature: domain Description: Ycf54 Location: 47707-47980 bp Feature: domain Description: Ycf54 Location: 47707-47980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLN00020 (ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional), RuBisCO_small_like (cl01843), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PdxJ (pfam03740), Ycf54 (pfam10674)

Seq: LT797711.1 (777729 bp)
Overview 1 RT 1: 123117-126106 bp Neighborhood of RT #1 [123117, 126106] HicB Uma2 RVT-DGRs Avd_like Feature: gene Location: 123117-123332 bp Feature: domain Description: HicB Location: 123120-123300 bp Feature: domain Description: HicB Location: 123120-123300 bp Feature: gene Location: 123395-123997 bp Feature: domain Description: Uma2 Location: 123428-123980 bp Feature: domain Description: Uma2 Location: 123428-123980 bp Feature: gene Location: 124405-125463 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 124609-125257 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 124609-125257 bp Feature: gene Location: 125460-125816 bp Feature: domain Description: Avd_like Location: 125484-125790 bp Feature: domain Description: Avd_like Location: 125484-1257 90 bp Feature: gene Location: 125897-126106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HicB (pfam05534), Uma2 (pfam05685), RVT-DGRs, Avd_like (cd16376)

Seq: LT797710.1 (710824 bp)
Overview 1 RT 1: 186767-189922 bp Neighborhood of RT #1 [186767, 189922] RVT_N RVT-GII GIIM HNH Feature: gene Location: 186767-187048 bp Feature: gene Location: 187051-187269 bp Feature: gene Location: 187644-189383 bp Feature: domain Description: RVT_N Location: 187680-187926 bp Feature: domain Description: RVT_N Location: 18 768 0-18 7926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187968-188637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18 7968 -18 8 637 bp Feature: domain Description: GIIM Note: maturase Location: 188745-188955 bp Feature: domain Description: GIIM Note: maturase Location: 18 8 745-18 8 955 bp Feature: domain Description: HNH Note: nucleases Location: 189186-189321 bp Feature: domain Description: HNH Note: nucleases Location: 18 918 6-18 9321 bp Feature: gene Location: 189396-189692 bp Feature: gene Location: 189707-189922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: LT797701.1 (921973 bp)
Overview 1 RT 1: 694003-698811 bp Neighborhood of RT #1 [694003, 698837] INT_C_like_1 RVT_N RVT-GII GIIM McrA DUF29 Feature: gene Location: 694003-694302 bp Feature: domain Description: INT_C_like_1 Location: 694036-694150 bp Feature: domain Description: INT_C_like_1 Location: 69 4036-69 4150 bp Feature: gene Location: 694425-695495 bp Feature: gene Location: 696386-698134 bp Feature: domain Description: RVT_N Location: 696464-696710 bp Feature: domain Description: RVT_N Location: 69 6464-69 6710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 696752-697418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69 6752-69 7418 bp Feature: domain Description: GIIM Note: maturase Location: 697517-697718 bp Feature: domain Description: GIIM Note: maturase Location: 69 7517-69 7718 bp Feature: domain Description: McrA Location: 697820-698090 bp Feature: domain Description: McrA Location: 69 7820-69 809 0 bp Feature: gene Location: 698156-698314 bp Feature: gene Location: 698349-698837 bp Feature: domain Description: DUF29 Location: 698400-698811 bp Feature: domain Description: DUF29 Location: 69 8400-69 8811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_C_like_1 (cd01184), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), DUF29 (pfam01724)

Seq: LT797699.1 (200479 bp)
Overview 1 RT 1: 158536-163972 bp Neighborhood of RT #1 [158536, 169065] PRK05218 RVT-GII GIIM HNH rpl28 PilX Feature: gene Location: 158536-160515 bp Feature: domain Description: PRK05218 Location: 158551-160507 bp Feature: domain Description: PRK05218 Location: 158551-160507 bp Feature: gene Location: 160903-161121 bp Feature: gene Location: 161412-162767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161442-162021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161442-162021 bp Feature: domain Description: GIIM Note: maturase Location: 162129-162339 bp Feature: domain Description: GIIM Note: maturase Location: 162129-162339 bp Feature: domain Description: HNH Note: nucleases Location: 162570-162705 bp Feature: domain Description: HNH Note: nucleases Location: 162570-162705 bp Feature: gene Location: 162877-163113 bp Feature: domain Description: rpl28 Location: 162880-163057 bp Feature: domain Description: rpl28 Location: 162880-163057 bp Feature: gene Location: 163618-169065 bp Feature: domain Description: PilX Location: 163744-163972 bp Feature: domain Description: PilX Location: 163744-163972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05218 (heat shock protein 90; Provisional), RVT-GII, GIIM (pfam08388), HNH (pfam01844), rpl28 (CHL00112), PilX (pfam13681)

Seq: LT797719.1 (1407 bp)
Overview 1 RT 1: 1-1267 bp Neighborhood of RT #1 [1, 1329] RVT-GII GIIM HNH Feature: gene Location: 1-1329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-583 bp Feature: domain Description: GIIM Note: maturase Location: 691-901 bp Feature: domain Description: GIIM Note: maturase Location: 691-901 bp Feature: domain Description: HNH Note: nucleases Location: 1132-1267 bp Feature: domain Description: HNH Note: nucleases Location: 11 32-1267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: LT797694.1 (70801 bp)
Overview 1 RT 1: 4697-10618 bp Neighborhood of RT #1 [4697, 10635] BMC_like_1_repeat1 BMC_like_1_repeat1 RVT_N RVT-GII GIIM HNHc Prefoldin_2 DUF3086 PRK14419 Feature: gene Location: 4697-4966 bp Feature: gene Location: 5181-5822 bp Feature: domain Description: BMC_like_1_repeat1 Location: 5193-5523 bp Feature: domain Description: BMC_like_1_repeat1 Location: 5193-5523 bp Feature: domain Description: BMC_like_1_repeat1 Location: 5523-5778 bp Feature: domain Description: BMC_like_1_repeat1 Location: 5523-5778 bp Feature: gene Location: 6763-8499 bp Feature: domain Description: RVT_N Location: 6799-7045 bp Feature: domain Description: RVT_N Location: 6799-7045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7087-7753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7087-7753 bp Feature: domain Description: GIIM Note: maturase Location: 7858-8089 bp Feature: domain Description: GIIM Note: maturase Location: 7858-8089 bp Feature: domain Description: HNHc Note: nucleases Location: 8281-8434 bp Feature: domain Description: HNHc Note: nucleases Location: 8281-8434 bp Feature: gene Location: 8678-9925 bp Feature: domain Description: Prefoldin_2 Location: 8897-9005 bp Feature: domain Description: Prefoldin_2 Location: 8897-9005 bp Feature: domain Description: DUF3086 Location: 9065-9902 bp Feature: domain Description: DUF3086 Location: 9065-9902 bp Feature: gene Location: 9958-10635 bp Feature: domain Description: PRK14419 Location: 9982-10618 bp Feature: domain Description: PRK14419 Location: 9982-10618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BMC_like_1_repeat1 (cd07051), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Prefoldin_2 (pfam01920), DUF3086 (pfam11285), PRK14419 (membrane protein; Provisional)

Seq: LT797703.1 (216542 bp)
Overview 1 RT 1: 189785-195930 bp Neighborhood of RT #1 [189785, 196025] RVT_N RVT-GII GIIM McrA PLN00049 Lpd Lpd Feature: gene Location: 189785-190294 bp Feature: gene Location: 190494-190643 bp Feature: gene Location: 190665-192413 bp Feature: domain Description: RVT_N Location: 190743-190989 bp Feature: domain Description: RVT_N Location: 190743-190989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 191031-191697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 191031-191697 bp Feature: domain Description: GIIM Note: maturase Location: 191796-191997 bp Feature: domain Description: GIIM Note: maturase Location: 191796-191997 bp Feature: domain Description: McrA Location: 192099-192369 bp Feature: domain Description: McrA Location: 192099-192369 bp Feature: gene Location: 193223-194458 bp Feature: domain Description: PLN00049 Location: 193310-194375 bp Feature: domain Description: PLN00049 Location: 193310-194375 bp Feature: gene Location: 194610-196025 bp Feature: domain Description: Lpd Location: 194619-194724 bp Feature: domain Description: Lpd Location: 194619-194724 bp Feature: domain Description: Lpd Location: 194862-195930 bp Feature: domain Description: Lpd Location: 194862-195930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PLN00049 (carboxyl-terminal processing protease; Provisional), Lpd (COG1249)