myRT

myRT report for GCA_900009275.1_AAI_PRJEB10990

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Seq: LN887835.1 Planktothrix rubescens strain 7821 genome assembly, scaffold: AAI_N_PLAN_scaffold1, whole genome shotgun sequence (1293269 bp)
Overview 1 RT 1: 479164-487295 bp Neighborhood of RT #1 [479164, 487318] STKc_PknB_like TPR TPR_1 TPR TPR_1 TPR RVT_N RVT-GII GIIM McrA PRK00174 MASE1 Feature: gene Location: 479164-481353 bp Feature: domain Description: STKc_PknB_like Location: 479197-479995 bp Feature: domain Description: STKc_PknB_like Location: 4791 97-479995 bp Feature: domain Description: TPR Location: 480196-480463 bp Feature: domain Description: TPR Location: 4801 96-480463 bp Feature: domain Description: TPR_1 Location: 480484-480577 bp Feature: domain Description: TPR_1 Location: 480484-480577 bp Feature: domain Description: TPR Location: 480586-480868 bp Feature: domain Description: TPR Location: 480586-480868 bp Feature: domain Description: TPR_1 Location: 480892-480979 bp Feature: domain Description: TPR_1 Location: 480892-480979 bp Feature: domain Description: TPR Location: 481027-481270 bp Feature: domain Description: TPR Location: 481 027-481 270 bp Feature: gene Location: 481491-481622 bp Feature: gene Location: 482276-484054 bp Feature: RT Description: RVT_N Location: 482315-482561 bp Feature: RT Description: RVT_N Location: 48231 5-482561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482669-483308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482669-483308 bp Feature: domain Description: GIIM Note: maturase Location: 483407-483608 bp Feature: domain Description: GIIM Note: maturase Location: 483407-483608 bp Feature: domain Description: McrA Location: 483695-483986 bp Feature: domain Description: McrA Location: 483695-483986 bp Feature: gene Location: 484424-486013 bp Feature: domain Description: PRK00174 Location: 484427-486002 bp Feature: domain Description: PRK001 74 Location: 484427-486002 bp Feature: gene Location: 486473-487318 bp Feature: domain Description: MASE1 Location: 486515-487295 bp Feature: domain Description: MASE1 Location: 48651 5-487295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), TPR (smart00028), TPR_1 (pfam00515), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PRK00174 (acetyl-CoA synthetase; Provisional), MASE1 (pfam05231)

Seq: LN887837.1 Planktothrix rubescens strain 7821 genome assembly, scaffold: AAI_N_PLAN_scaffold3, whole genome shotgun sequence (3408388 bp)
Overview 1 RT 1: 10319-16519 bp 2 RT 2: 19089-24403 bp 3 RT 3: 795173-802979 bp 4 RT 4: 1296771-1304030 bp 5 RT 5: 1313023-1319654 bp 6 RT 6: 2805571-2814714 bp 7 RT 7: 3327871-3331870 bp Neighborhood of RT #1 [10319, 16519] ABC_perm_GldF GldA_ABC_ATP RVT_N RVT-GII GIIM N6_N4_Mtase Neighborhood of RT #2 [19089, 24403] NrdF HNH_3 RVT_N RVT-GII GIIM McrA NrdF Neighborhood of RT #3 [795173, 803008] RVT_N RVT-GII RVT-GII GIIM McrA RVT_N RVT-GII GIIM RVT-GII GIIM DUF4926 Neighborhood of RT #4 [1296771, 1304038] dCache_1 HNHc RVT_N RVT-GII GIIM dCache_1 PRK11360 PRK11360 PRK11360 PRK11360 UvrC Neighborhood of RT #5 [1313023, 1319654] SMC_prok_B Smc Crp RVT_N RVT-GII GIIM HNHc argS DALR_1 Neighborhood of RT #6 [2805571, 2814758] amt amt NtrB BaeS RVT_N RVT-GII GIIM HNHc RlmL His_Phos_1 Neighborhood of RT #7 [3327871, 3331986] TPR PRK07459 RVT_N RVT-GII GIIM McrA PRK07459 OrfB_IS605 Feature: gene Location: 10319-11119 bp Feature: domain Description: ABC_perm_GldF Location: 10346-11096 bp Feature: domain Description: ABC_perm_GldF Location: 10346-11096 bp Feature: gene Location: 11122-12225 bp Feature: domain Description: GldA_ABC_ATP Location: 11128-12052 bp Feature: domain Description: GldA_ABC_ATP Location: 1112 8-12 052 bp Feature: gene Location: 13013-14554 bp Feature: RT Description: RVT_N Location: 13046-13292 bp Feature: RT Description: RVT_N Location: 13046-132 92 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13334-14006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13334-14006 bp Feature: domain Description: GIIM Note: maturase Location: 14108-14330 bp Feature: domain Description: GIIM Note: maturase Location: 14108-14330 bp Feature: gene Location: 15316-15852 bp Feature: domain Description: N6_N4_Mtase Location: 15403-15562 bp Feature: domain Description: N6_N4_Mtase Location: 15403-15562 bp Feature: gene Location: 16025-16519 bp Feature: gene Location: 19089-19490 bp Feature: domain Description: NrdF Location: 19101-19482 bp Feature: domain Description: NrdF Location: 19101-19482 bp Feature: gene Location: 19563-20312 bp Feature: domain Description: HNH_3 Location: 19704-19836 bp Feature: domain Description: HNH_3 Location: 19704-19836 bp Feature: gene Location: 21018-22784 bp Feature: RT Description: RVT_N Location: 21057-21303 bp Feature: RT Description: RVT_N Location: 2 1057-2 1303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21411-22044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1411-2 2 044 bp Feature: domain Description: GIIM Note: maturase Location: 22143-22365 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 143-2 2 365 bp Feature: domain Description: McrA Location: 22428-22722 bp Feature: domain Description: McrA Location: 2 2 42 8-2 2 72 2 bp Feature: gene Location: 23375-23701 bp Feature: domain Description: NrdF Location: 23381-23681 bp Feature: domain Description: NrdF Location: 2 3381-2 3681 bp Feature: gene Location: 23870-24403 bp Feature: gene Location: 795173-795613 bp Feature: gene Location: 795798-796445 bp Feature: gene Location: 797953-799563 bp Feature: RT Description: RVT_N Location: 797992-798238 bp Feature: RT Description: RVT_N Location: 797992 -7982 38 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 798280-798628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7982 80-79862 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 798628-798823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79862 8-79882 3 bp Feature: domain Description: GIIM Note: maturase Location: 798925-799123 bp Feature: domain Description: GIIM Note: maturase Location: 79892 5-79912 3 bp Feature: domain Description: McrA Location: 799228-799501 bp Feature: domain Description: McrA Location: 7992 2 8-799501 bp Feature: gene Location: 799685-801115 bp Feature: RT Description: RVT_N Location: 799718-799964 bp Feature: RT Description: RVT_N Location: 799718-799964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 800006-800678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 800006-800678 bp Feature: domain Description: GIIM Note: maturase Location: 800780-801002 bp Feature: domain Description: GIIM Note: maturase Location: 800780-801002 bp Feature: gene Location: 801210-802154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801216-801606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8012 16-801606 bp Feature: domain Description: GIIM Note: maturase Location: 801708-801930 bp Feature: domain Description: GIIM Note: maturase Location: 801708-801930 bp Feature: gene Location: 802530-802748 bp Feature: gene Location: 802766-803008 bp Feature: domain Description: DUF4926 Location: 802772-802979 bp Feature: domain Description: DUF492 6 Location: 802 772 -802 979 bp Feature: gene Location: 1296771-1297202 bp Feature: domain Description: dCache_1 Location: 1296954-1297173 bp Feature: domain Description: dCache_1 Location: 12 96954-12 97173 bp Feature: gene Location: 1297280-1297504 bp Feature: domain Description: HNHc Note: nucleases Location: 1297298-1297436 bp Feature: domain Description: HNHc Note: nucleases Location: 12 972 98-12 97436 bp Feature: gene Location: 1297634-1299007 bp Feature: RT Description: RVT_N Location: 1297679-1297925 bp Feature: RT Description: RVT_N Location: 12 97679-12 9792 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1297967-1298636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 97967-12 98636 bp Feature: domain Description: GIIM Note: maturase Location: 1298735-1298957 bp Feature: domain Description: GIIM Note: maturase Location: 12 98735-12 98957 bp Feature: gene Location: 1299821-1302118 bp Feature: domain Description: dCache_1 Location: 1299827-1300169 bp Feature: domain Description: dCache_1 Location: 12 9982 7-1300169 bp Feature: domain Description: PRK11360 Location: 1300184-1300847 bp Feature: domain Description: PRK11360 Location: 1300184-1300847 bp Feature: domain Description: PRK11360 Location: 1300877-1301216 bp Feature: domain Description: PRK11360 Location: 1300877-13012 16 bp Feature: domain Description: PRK11360 Location: 1301249-1301378 bp Feature: domain Description: PRK11360 Location: 13012 49-1301378 bp Feature: domain Description: PRK11360 Location: 1301525-1302083 bp Feature: domain Description: PRK11360 Location: 130152 5-1302 083 bp Feature: gene Location: 1302179-1304038 bp Feature: domain Description: UvrC Location: 1302218-1304030 bp Feature: domain Description: UvrC Location: 1302 2 18-1304030 bp Feature: gene Location: 1313023-1314762 bp Feature: domain Description: SMC_prok_B Location: 1313161-1313971 bp Feature: domain Description: SMC_prok_B Location: 1313161-1313971 bp Feature: domain Description: Smc Location: 1314385-1314742 bp Feature: domain Description: Smc Location: 1314385-1314742 bp Feature: gene Location: 1314812-1315570 bp Feature: domain Description: Crp Location: 1315055-1315499 bp Feature: domain Description: Crp Location: 1315055-1315499 bp Feature: gene Location: 1315916-1317661 bp Feature: RT Description: RVT_N Location: 1315970-1316216 bp Feature: RT Description: RVT_N Location: 1315970-13162 16 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1316255-1316927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13162 55-131692 7 bp Feature: domain Description: GIIM Note: maturase Location: 1317032-1317263 bp Feature: domain Description: GIIM Note: maturase Location: 1317032 -13172 63 bp Feature: domain Description: HNHc Note: nucleases Location: 1317455-1317608 bp Feature: domain Description: HNHc Note: nucleases Location: 1317455-1317608 bp Feature: gene Location: 1318413-1319237 bp Feature: domain Description: argS Location: 1318482-1318623 bp Feature: domain Description: argS Location: 1318482 -131862 3 bp Feature: domain Description: DALR_1 Location: 1318806-1319226 bp Feature: domain Description: DALR_1 Location: 1318806-13192 2 6 bp Feature: gene Location: 1319256-1319654 bp Feature: gene Location: 2805571-2807082 bp Feature: domain Description: amt Location: 2805835-2806993 bp Feature: domain Description: amt Location: 2 805835-2 806993 bp Feature: gene Location: 2807294-2809978 bp Feature: domain Description: amt Location: 2807309-2808482 bp Feature: domain Description: amt Location: 2 807309-2 808482 bp Feature: domain Description: NtrB Location: 2808632-2808983 bp Feature: domain Description: NtrB Location: 2 808632 -2 808983 bp Feature: domain Description: BaeS Location: 2808989-2809922 bp Feature: domain Description: BaeS Location: 2 808989-2 80992 2 bp Feature: gene Location: 2811197-2812924 bp Feature: RT Description: RVT_N Location: 2811242-2811488 bp Feature: RT Description: RVT_N Location: 2 8112 42 -2 811488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2811530-2812199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 811530-2 812 199 bp Feature: domain Description: GIIM Note: maturase Location: 2812298-2812520 bp Feature: domain Description: GIIM Note: maturase Location: 2 812 2 98-2 812 52 0 bp Feature: domain Description: HNHc Note: nucleases Location: 2812715-2812868 bp Feature: domain Description: HNHc Note: nucleases Location: 2 812 715-2 812 868 bp Feature: gene Location: 2813102-2814088 bp Feature: domain Description: RlmL Location: 2813108-2814083 bp Feature: domain Description: RlmL Location: 2 813108-2 814083 bp Feature: gene Location: 2814117-2814758 bp Feature: domain Description: His_Phos_1 Location: 2814132-2814714 bp Feature: domain Description: His_Phos_1 Location: 2 814132 -2 814714 bp Feature: gene Location: 3327871-3328410 bp Feature: domain Description: TPR Location: 3327904-3328096 bp Feature: domain Description: TPR Location: 332 7904-332 8096 bp Feature: gene Location: 3328423-3328563 bp Feature: domain Description: PRK07459 Location: 3328429-3328540 bp Feature: domain Description: PRK07459 Location: 332 842 9-332 8540 bp Feature: gene Location: 3328747-3330498 bp Feature: RT Description: RVT_N Location: 3328780-3329026 bp Feature: RT Description: RVT_N Location: 332 8780-332 902 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3329068-3329734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332 9068-332 9734 bp Feature: domain Description: GIIM Note: maturase Location: 3329839-3330073 bp Feature: domain Description: GIIM Note: maturase Location: 332 9839-3330073 bp Feature: domain Description: McrA Location: 3330121-3330415 bp Feature: domain Description: McrA Location: 333012 1-3330415 bp Feature: gene Location: 3331121-3331264 bp Feature: domain Description: PRK07459 Location: 3331190-3331256 bp Feature: domain Description: PRK07459 Location: 3331190-33312 56 bp Feature: gene Location: 3331645-3331986 bp Feature: domain Description: OrfB_IS605 Location: 3331717-3331870 bp Feature: domain Description: OrfB_IS605 Location: 3331717-3331870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_perm_GldF (TIGR03518), GldA_ABC_ATP (TIGR03522), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_N4_Mtase (pfam01555), NrdF (COG0208), HNH_3 (pfam13392), McrA (COG4058), DUF4926 (pfam16277)
dCache_1 (pfam02743), HNHc (smart00507), PRK11360 (two-component system sensor histidine kinase AtoS), UvrC (COG0322), SMC_prok_B (TIGR02168), Smc (COG1196), Crp (pfam00325), argS (TIGR00456), DALR_1 (smart00836), amt (TIGR00836)
NtrB (COG3852), BaeS (COG0642), RlmL (COG0116), His_Phos_1 (pfam00300), TPR (smart00028), PRK07459 (single-stranded DNA-binding protein; Provisional), OrfB_IS605 (pfam01385)

Seq: LN887838.1 Planktothrix rubescens strain 7821 genome assembly, scaffold: AAI_N_PLAN_scaffold4, whole genome shotgun sequence (1024923 bp)
Overview 1 RT 1: 86401-94086 bp 2 RT 2: 611112-616875 bp Neighborhood of RT #1 [86401, 94166] InsQ TlcC HEAT_2 HEAT_2 HEAT_2 RVT_N RVT-GII GIIM McrA Crp YneE Neighborhood of RT #2 [611112, 616875] HTH_23 HTH_33 DDE_3 COG2442 RVT_N RVT-GII GIIM HNHc FruBisAldo_II_B Feature: gene Location: 86401-86793 bp Feature: domain Description: InsQ Location: 86416-86518 bp Feature: domain Description: InsQ Location: 86416-86518 bp Feature: gene Location: 87050-90094 bp Feature: domain Description: TlcC Location: 87500-88430 bp Feature: domain Description: TlcC Location: 87500-8843 0 bp Feature: domain Description: HEAT_2 Location: 88916-89084 bp Feature: domain Description: HEAT_2 Location: 88916-89084 bp Feature: domain Description: HEAT_2 Location: 89090-89261 bp Feature: domain Description: HEAT_2 Location: 89090-89261 bp Feature: domain Description: HEAT_2 Location: 89954-90068 bp Feature: domain Description: HEAT_2 Location: 89954-90068 bp Feature: gene Location: 90741-92480 bp Feature: RT Description: RVT_N Location: 90783-91029 bp Feature: RT Description: RVT_N Location: 90783 -91029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91071-91740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91071-91740 bp Feature: domain Description: GIIM Note: maturase Location: 91842-92040 bp Feature: domain Description: GIIM Note: maturase Location: 91842-92040 bp Feature: domain Description: McrA Location: 92145-92460 bp Feature: domain Description: McrA Location: 92145-92460 bp Feature: gene Location: 92664-93149 bp Feature: domain Description: Crp Location: 92700-93078 bp Feature: domain Description: Crp Location: 92700-93 078 bp Feature: gene Location: 93195-94166 bp Feature: domain Description: YneE Location: 93210-94086 bp Feature: domain Description: YneE Location: 93 210-94086 bp Feature: gene Location: 611112-612224 bp Feature: domain Description: HTH_23 Location: 611193-611292 bp Feature: domain Description: HTH_23 Location: 611193 -611292 bp Feature: domain Description: HTH_33 Location: 611430-611607 bp Feature: domain Description: HTH_3 3 Location: 61143 0-611607 bp Feature: domain Description: DDE_3 Location: 611655-612129 bp Feature: domain Description: DDE_3 Location: 611655-612129 bp Feature: gene Location: 612605-612922 bp Feature: domain Description: COG2442 Location: 612626-612827 bp Feature: domain Description: COG2442 Location: 612626-612827 bp Feature: gene Location: 613640-615376 bp Feature: RT Description: RVT_N Location: 613673-613919 bp Feature: RT Description: RVT_N Location: 613 673 -613 919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 613961-614633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 613 961-61463 3 bp Feature: domain Description: GIIM Note: maturase Location: 614741-614966 bp Feature: domain Description: GIIM Note: maturase Location: 614741-614966 bp Feature: domain Description: HNHc Note: nucleases Location: 615158-615314 bp Feature: domain Description: HNHc Note: nucleases Location: 615158-6153 14 bp Feature: gene Location: 615508-616587 bp Feature: domain Description: FruBisAldo_II_B Location: 615517-616555 bp Feature: domain Description: FruBisAldo_II_B Location: 615517-616555 bp Feature: gene Location: 616687-616875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), TlcC (COG3202), HEAT_2 (pfam13646), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Crp (pfam00325), YneE (COG3781), HTH_23 (pfam13384)
HTH_33 (pfam13592), DDE_3 (pfam13358), COG2442 (Uncharacterized conserved protein, DUF433 family ), HNHc (smart00507), FruBisAldo_II_B (TIGR01521)

Seq: LN887839.1 Planktothrix rubescens strain 7821 genome assembly, scaffold: AAI_N_PLAN_scaffold5, whole genome shotgun sequence (5396170 bp)
Overview 1 RT 1: 180642-188377 bp 2 RT 2: 450661-457148 bp Neighborhood of RT #1 [180642, 188433] CyoB CyoA RVT_N RVT-GII GIIM HNHc CyoA CyoE Neighborhood of RT #2 [450661, 457148] InsQ PRC PRC RVT-GII InsQ PBP1_ABC_ligand_binding_like_9 Feature: gene Location: 180642-182414 bp Feature: domain Description: CyoB Location: 180708-182280 bp Feature: domain Description: CyoB Location: 180708-182280 bp Feature: gene Location: 182442-183170 bp Feature: domain Description: CyoA Location: 182622-183048 bp Feature: domain Description: CyoA Location: 182622-18304 8 bp Feature: gene Location: 183299-185026 bp Feature: RT Description: RVT_N Location: 183344-183590 bp Feature: RT Description: RVT_N Location: 18334 4 -183590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183632-184301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183632-184 301 bp Feature: domain Description: GIIM Note: maturase Location: 184400-184622 bp Feature: domain Description: GIIM Note: maturase Location: 184 4 00-184 622 bp Feature: domain Description: HNHc Note: nucleases Location: 184817-184970 bp Feature: domain Description: HNHc Note: nucleases Location: 184 817-184 970 bp Feature: gene Location: 185693-186034 bp Feature: domain Description: CyoA Location: 185726-186020 bp Feature: domain Description: CyoA Location: 185726-186020 bp Feature: gene Location: 187468-188433 bp Feature: domain Description: CyoE Location: 187498-188377 bp Feature: domain Description: CyoE Location: 1874 98-188377 bp Feature: gene Location: 450661-451878 bp Feature: domain Description: InsQ Location: 450910-451693 bp Feature: domain Description: InsQ Location: 4 50910-4 51693 bp Feature: gene Location: 452009-453010 bp Feature: domain Description: PRC Location: 452033-452240 bp Feature: domain Description: PRC Location: 4 52033-4 5224 0 bp Feature: domain Description: PRC Location: 452267-452498 bp Feature: domain Description: PRC Location: 4 52267-4 524 98 bp Feature: gene Location: 453028-454827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453031-453625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 53031-4 53625 bp Feature: domain Description: InsQ Location: 453763-454732 bp Feature: domain Description: InsQ Location: 4 53763-4 54 732 bp Feature: gene Location: 455750-456235 bp Feature: domain Description: PBP1_ABC_ligand_binding_like_9 Location: 455756-456230 bp Feature: domain Description: PBP1_ABC_ligand_binding_like_9 Location: 4 55756-4 56230 bp Feature: gene Location: 456624-457148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CyoB (TIGR02843), CyoA (TIGR01433), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), CyoE (COG0109), InsQ (COG0675), PRC (pfam05239), PBP1_ABC_ligand_binding_like_9