myRT

myRT report for GCA_900016875.1_CHKCI004

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Seq: FCNR01000042.1 (111212 bp)
Overview 1 RT 1: 81985-88907 bp Neighborhood of RT #1 [81985, 88948] KOG3678 RVT-CRISPR COG4951 Cas2_I_II_III Cas1_I-II-III Feature: gene Location: 81985-82389 bp Feature: gene Location: 82392-83891 bp Feature: domain Description: KOG3678 Location: 83460-83880 bp Feature: domain Description: KOG3678 Location: 83460-83880 bp Feature: gene Location: 84794-87655 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 85058-85658 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 85058-85658 bp Feature: domain Description: COG4951 Location: 86363-86948 bp Feature: domain Description: COG4951 Location: 86363-86948 bp Feature: gene Location: 87670-87984 bp Feature: domain Description: Cas2_I_II_III Location: 87706-87937 bp Feature: domain Description: Cas2_I_II_III Location: 87706-87937 bp Feature: gene Location: 87956-88948 bp Feature: domain Description: Cas1_I-II-III Location: 87968-88907 bp Feature: domain Description: Cas1 _I-II-III Location: 87968-88907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG3678 (KOG3678, SARM protein (with sterile alpha and armadillo motifs) ), RVT-CRISPR, COG4951 (Uncharacterized protein ), Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656)

Seq: FCNR01000048.1 (142398 bp)
Overview 1 RT 1: 101025-110100 bp 2 RT 2: 113594-118612 bp Neighborhood of RT #1 [101025, 110100] Cas2_I_II_III RVT-CRISPR cas1_HMARI Neighborhood of RT #2 [113594, 118612] KOG3678 RVT-UG26 Feature: gene Location: 101025-101882 bp Feature: gene Location: 102882-103142 bp Feature: domain Description: Cas2_I_II_III Location: 102891-103116 bp Feature: domain Description: Cas2 _I_II_III Location: 102 891-103116 bp Feature: gene Location: 103154-105070 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 103376-103952 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 103376-103952 bp Feature: domain Description: cas1_HMARI Location: 104090-105062 bp Feature: domain Description: cas1_HMARI Location: 104090-105062 bp Feature: gene Location: 105786-105959 bp Feature: gene Location: 105979-110100 bp Feature: gene Location: 113594-115189 bp Feature: domain Description: KOG3678 Location: 114713-115151 bp Feature: domain Description: KOG3678 Location: 114713-115151 bp Feature: gene Location: 115963-116358 bp Feature: gene Location: 116514-117734 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 116712-117327 bp Feature: RT Description: RVT-UG2 6 Note: UG2 6 RT Location: 116712 -11732 7 bp Feature: gene Location: 117820-117984 bp Feature: gene Location: 118451-118612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, cas1_HMARI (TIGR03641), KOG3678 (KOG3678, SARM protein (with sterile alpha and armadillo motifs) ), RVT-UG26

Seq: FCNR01000063.1 (423250 bp)
Overview 1 RT 1: 346499-353400 bp Neighborhood of RT #1 [346499, 353531] CsoR-like_DUF156_1 RVT-GII GIIM WrbA PRK12999 Feature: gene Location: 346499-346894 bp Feature: domain Description: CsoR-like_DUF156_1 Location: 346649-346889 bp Feature: domain Description: CsoR-like_DUF156_1 Location: 3 46649-3 46889 bp Feature: gene Location: 347054-347221 bp Feature: gene Location: 347536-348927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347851-348475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 47851-3 48475 bp Feature: domain Description: GIIM Note: maturase Location: 348532-348748 bp Feature: domain Description: GIIM Note: maturase Location: 3 4853 2-3 48748 bp Feature: gene Location: 349005-349712 bp Feature: domain Description: WrbA Location: 349008-349572 bp Feature: domain Description: WrbA Location: 3 49008-3 49572 bp Feature: gene Location: 349956-353531 bp Feature: domain Description: PRK12999 Location: 349974-353400 bp Feature: domain Description: PRK12999 Location: 3 49974-3 53 400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CsoR-like_DUF156_1 (cd10158), RVT-GII, GIIM (pfam08388), WrbA (COG0655), PRK12999 (pyruvate carboxylase; Reviewed)

Seq: FCNR01000075.1 (2529 bp)
Overview 1 RT 1: 609-2388 bp Neighborhood of RT #1 [609, 2423] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 609-2423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 879-1692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 879-1692 bp Feature: domain Description: Intron_maturas2 Location: 1761-2091 bp Feature: domain Description: Intron_maturas2 Location: 1761-2091 bp Feature: domain Description: HNHc Note: nucleases Location: 2241-2388 bp Feature: domain Description: HNHc Note: nucleases Location: 224 1-2388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: FCNR01000043.1 (24414 bp)
Overview 1 RT 1: 1729-4193 bp Neighborhood of RT #1 [1729, 4193] DUF3800 DUF3800 RVT-Retrons HTH_XRE Feature: gene Location: 1729-2343 bp Feature: domain Description: DUF3800 Location: 1816-2281 bp Feature: domain Description: DUF3800 Location: 1816-2281 bp Feature: gene Location: 2402-2617 bp Feature: domain Description: DUF3800 Location: 2411-2570 bp Feature: domain Description: DUF3800 Location: 2411-25 70 bp Feature: gene Location: 2702-3637 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2855-3395 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 285 5 -3395 bp Feature: gene Location: 3637-3930 bp Feature: domain Description: HTH_XRE Location: 3646-3811 bp Feature: domain Description: HTH_XRE Location: 3646-3811 bp Feature: gene Location: 4017-4193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3800 (pfam12686), RVT-Retrons, HTH_XRE (smart00530)

Seq: FCNR01000028.1 (155747 bp)
Overview 1 RT 1: 1259-4834 bp 2 RT 2: 83767-87006 bp Neighborhood of RT #1 [1259, 4834] HTH_36 RVT-GII GIIM Neighborhood of RT #2 [83767, 87023] RVT-DGRs Phage_XkdX Feature: gene Location: 1259-2188 bp Feature: domain Description: HTH_36 Location: 1334-1481 bp Feature: domain Description: HTH_36 Location: 1334-1481 bp Feature: gene Location: 2427-2636 bp Feature: gene Location: 2728-4044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3019-3652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3019-36 52 bp Feature: domain Description: GIIM Note: maturase Location: 3733-3883 bp Feature: domain Description: GIIM Note: maturase Location: 3733-3883 bp Feature: gene Location: 4041-4352 bp Feature: gene Location: 4406-4834 bp Feature: gene Location: 83767-85032 bp Feature: gene Location: 85102-85230 bp Feature: gene Location: 85438-86673 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 85741-86362 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 85741-86 36 2 bp Feature: gene Location: 86609-86872 bp Feature: gene Location: 86874-87023 bp Feature: domain Description: Phage_XkdX Location: 86904-87006 bp Feature: domain Description: Phage_XkdX Location: 86 904-87006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_36 (pfam13730), RVT-GII, GIIM (pfam08388), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: FCNR01000046.1 (2613 bp)
Overview 1 RT 1: 126-2528 bp Neighborhood of RT #1 [126, 2528] RVT-GII Intron_maturas2 Feature: gene Location: 126-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1233 bp Feature: domain Description: Intron_maturas2 Location: 1308-1611 bp Feature: domain Description: Intron_maturas2 Location: 1308-1611 bp Feature: gene Location: 2250-2528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)