myRT

myRT report for GCA_900019265.2_BN2475-7296

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Seq: CYGX02000131.1 (5649 bp)
Overview 1 RT 1: 64-1692 bp Neighborhood of RT #1 [64, 1692] RVT_N RVT-GII Feature: gene Location: 64-468 bp Feature: domain Description: RVT_N Location: 127-364 bp Feature: domain Description: RVT_N Location: 1 27-364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 5-460 bp Feature: gene Location: 66-836 bp Feature: gene Location: 1303-1692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: CYGX02000156.1 (789 bp)
Overview 1 RT 1: 3-786 bp Neighborhood of RT #1 [3, 788] RVT-GII GIIM Feature: gene Location: 3-788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-489 bp Feature: domain Description: GIIM Note: maturase Location: 570-786 bp Feature: domain Description: GIIM Note: maturase Location: 570-786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CYGX02000039.1 (3787 bp)
Overview 1 RT 1: 3-3781 bp Neighborhood of RT #1 [3, 3786] RVT-GII Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM COG3547 Feature: gene Location: 3-386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-3 63 bp Feature: gene Location: 678-2045 bp Feature: domain Description: Resolvase Location: 699-1140 bp Feature: domain Description: Resolvase Location: 699-1140 bp Feature: domain Description: Recombinase Location: 1233-1590 bp Feature: domain Description: Recombinase Location: 123 3 -1590 bp Feature: domain Description: Zn_ribbon_recom Location: 1635-1839 bp Feature: domain Description: Zn_ribbon_recom Location: 163 5-183 9 bp Feature: gene Location: 2102-2392 bp Feature: gene Location: 2373-3131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2376-2625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 76-2625 bp Feature: domain Description: GIIM Note: maturase Location: 2676-2910 bp Feature: domain Description: GIIM Note: maturase Location: 2676-2910 bp Feature: gene Location: 3208-3378 bp Feature: gene Location: 3253-3786 bp Feature: domain Description: COG3547 Location: 3262-3781 bp Feature: domain Description: COG3 547 Location: 3 262-3 781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), GIIM (pfam08388), COG3547 (Transposase )

Seq: CYGX02000162.1 (535 bp)
Overview 1 RT 1: 2-535 bp Neighborhood of RT #1 [2, 534] RVT-GII Feature: gene Location: 2-205 bp Feature: gene Location: 214-534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331-535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331-535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CYGX02000017.1 (102106 bp)
Overview 1 RT 1: 48465-60027 bp Neighborhood of RT #1 [48465, 60089] RVT-Retrons ABC_ATPase RVT-GII RVT-GII Resolvase Recombinase Zn_ribbon_recom DUF4158 DDE_Tnp_Tn3 Feature: gene Location: 48465-48731 bp Feature: gene Location: 48910-49083 bp Feature: gene Location: 49086-50072 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49206-49776 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49206-49776 bp Feature: gene Location: 50075-51421 bp Feature: domain Description: ABC_ATPase Location: 50123-50834 bp Feature: domain Description: ABC_ATPase Location: 5 0123-5 0834 bp Feature: gene Location: 51826-52041 bp Feature: gene Location: 52149-52571 bp Feature: gene Location: 52610-54088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53021-53708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 3021-5 3708 bp Feature: gene Location: 54170-54307 bp Feature: gene Location: 54309-54914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54513-54903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 45 13-5 4903 bp Feature: gene Location: 55221-57005 bp Feature: domain Description: Resolvase Location: 55242-55683 bp Feature: domain Description: Resolvase Location: 5 5 242-5 5 683 bp Feature: domain Description: Recombinase Location: 55776-56133 bp Feature: domain Description: Recombinase Location: 5 5 776-5 6133 bp Feature: domain Description: Zn_ribbon_recom Location: 56178-56382 bp Feature: domain Description: Zn_ribbon_recom Location: 5 6178-5 6382 bp Feature: gene Location: 57066-60089 bp Feature: domain Description: DUF4158 Location: 57096-57582 bp Feature: domain Description: DUF415 8 Location: 5 7096-5 75 82 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 58851-60027 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5 885 1-60027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ABC_ATPase (pfam09818), RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526)

Seq: CYGX02000058.1 (65417 bp)
Overview 1 RT 1: 13954-21861 bp Neighborhood of RT #1 [13954, 22271] Histone_HNS Histone_HNS Histone_HNS DUF4145 RVT-UG1 SMC_prok_A SMC_prok_A SMC_prok_A Feature: gene Location: 13954-14688 bp Feature: domain Description: Histone_HNS Location: 13975-14251 bp Feature: domain Description: Histone_HNS Location: 13975-14251 bp Feature: domain Description: Histone_HNS Location: 14305-14431 bp Feature: domain Description: Histone_HNS Location: 14305-14431 bp Feature: domain Description: Histone_HNS Location: 14500-14641 bp Feature: domain Description: Histone_HNS Location: 14500-146 41 bp Feature: gene Location: 14789-15397 bp Feature: domain Description: DUF4145 Location: 15062-15320 bp Feature: domain Description: DUF4145 Location: 1506 2-15320 bp Feature: gene Location: 15407-19360 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 16130-16646 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 16 130-16 6 46 bp Feature: gene Location: 19431-20327 bp Feature: gene Location: 20352-22271 bp Feature: domain Description: SMC_prok_A Location: 20430-20529 bp Feature: domain Description: SMC_prok_A Location: 20430-20529 bp Feature: domain Description: SMC_prok_A Location: 21039-21318 bp Feature: domain Description: SMC_prok_A Location: 21039-21318 bp Feature: domain Description: SMC_prok_A Location: 21465-21861 bp Feature: domain Description: SMC_prok_A Location: 2146 5-2186 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), DUF4145 (pfam13643), RVT-UG1, SMC_prok_A (TIGR02169)

Seq: CYGX02000074.1 (3156 bp)
Overview 1 RT 1: 174-2423 bp Neighborhood of RT #1 [174, 2815] DUF4096 DDE_Tnp_1_2 RVT-GII Feature: gene Location: 174-929 bp Feature: domain Description: DUF4096 Location: 189-345 bp Feature: domain Description: DUF4096 Location: 189-345 bp Feature: domain Description: DDE_Tnp_1_2 Location: 636-912 bp Feature: domain Description: DDE_Tnp_1_2 Location: 636-912 bp Feature: gene Location: 1087-1287 bp Feature: gene Location: 1307-2815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1733-2423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17 33-2423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), DDE_Tnp_1_2 (pfam13586), RVT-GII

Seq: CYGX02000014.1 (79609 bp)
Overview 1 RT 1: 3-1889 bp Neighborhood of RT #1 [3, 1927] RVT-GII RVT-GII DUF3313 Feature: gene Location: 3-164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-153 bp Feature: gene Location: 177-482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183-450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18 3-450 bp Feature: gene Location: 570-866 bp Feature: gene Location: 1223-1927 bp Feature: domain Description: DUF3313 Location: 1331-1889 bp Feature: domain Description: DUF3313 Location: 1331-18 8 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF3313 (pfam11769)