myRT

myRT report for GCA_900044055.2_Burkholderia_sp._LMG_29321

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Seq: FCOX02000109.1 (14181 bp)
Overview 1 RT 1: 111-6058 bp Neighborhood of RT #1 [111, 6204] DDE_Tnp_1 RVT-GII GIIM RVT-GII GIIM DUF772 BaeS Feature: gene Location: 111-281 bp Feature: gene Location: 360-791 bp Feature: domain Description: DDE_Tnp_1 Location: 363-750 bp Feature: domain Description: DDE_Tnp_1 Location: 363-750 bp Feature: gene Location: 919-2265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1198-1846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 98-1 846 bp Feature: domain Description: GIIM Note: maturase Location: 1975-2164 bp Feature: domain Description: GIIM Note: maturase Location: 1 975-21 64 bp Feature: gene Location: 2817-4070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3030-3687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3030-3687 bp Feature: domain Description: GIIM Note: maturase Location: 3765-3984 bp Feature: domain Description: GIIM Note: maturase Location: 3765-3984 bp Feature: gene Location: 4572-5123 bp Feature: domain Description: DUF772 Location: 4737-4962 bp Feature: domain Description: DUF772 Location: 4737-4962 bp Feature: gene Location: 5155-6204 bp Feature: domain Description: BaeS Location: 5428-6058 bp Feature: domain Description: BaeS Location: 5428-6058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), BaeS (COG0642)

Seq: FCOX02000127.1 (9542 bp)
Overview 1 RT 1: 6023-9388 bp Neighborhood of RT #1 [6023, 9388] antidote_CC2985 RVT-GII GIIM RVT-GII Feature: gene Location: 6023-6304 bp Feature: domain Description: antidote_CC2985 Location: 6026-6206 bp Feature: domain Description: antidote_CC2 985 Location: 602 6-62 06 bp Feature: gene Location: 6260-6628 bp Feature: gene Location: 6860-7354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6869-6974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6869-6974 bp Feature: domain Description: GIIM Note: maturase Location: 7049-7268 bp Feature: domain Description: GIIM Note: maturase Location: 7049-72 68 bp Feature: gene Location: 7393-8181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7699-8119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7699-8119 bp Feature: gene Location: 8765-9301 bp Feature: gene Location: 9164-9388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT antidote_CC2985 (TIGR02606), RVT-GII, GIIM (pfam08388)

Seq: FCOX02000126.1 (9610 bp)
Overview 1 RT 1: 3799-6633 bp Neighborhood of RT #1 [3799, 6633] Phage_int_SAM_1 INT_RitC_C_like IS285 RVT-GII Feature: gene Location: 3799-4788 bp Feature: domain Description: Phage_int_SAM_1 Location: 3835-4087 bp Feature: domain Description: Phage_int_SAM_1 Location: 3 83 5-4087 bp Feature: domain Description: INT_RitC_C_like Location: 4171-4714 bp Feature: domain Description: INT_RitC_C_like Location: 4171-4714 bp Feature: gene Location: 4907-5374 bp Feature: domain Description: IS285 Location: 4916-5294 bp Feature: domain Description: IS285 Location: 4916-5294 bp Feature: gene Location: 5415-6068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5418-6015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5418-6015 bp Feature: gene Location: 6088-6447 bp Feature: gene Location: 6496-6633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), IS285 (COG3328), RVT-GII

Seq: FCOX02000213.1 (2698 bp)
Overview 1 RT 1: 1-2203 bp Neighborhood of RT #1 [1, 2203] RVT-GII GIIM PHA02517 Feature: gene Location: 1-906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13-385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13-385 bp Feature: domain Description: GIIM Note: maturase Location: 496-670 bp Feature: domain Description: GIIM Note: maturase Location: 4 96-670 bp Feature: gene Location: 1231-1557 bp Feature: domain Description: PHA02517 Location: 1234-1435 bp Feature: domain Description: PHA02517 Location: 1234 -14 35 bp Feature: gene Location: 1763-2203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: FCOX02000154.1 (6395 bp)
Overview 1 RT 1: 43-2097 bp Neighborhood of RT #1 [43, 2198] RVT-GII Phage_int_SAM_4 INT_IntI_C Feature: gene Location: 43-807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394-781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394-781 bp Feature: gene Location: 904-1077 bp Feature: gene Location: 1416-2198 bp Feature: domain Description: Phage_int_SAM_4 Location: 1428-1674 bp Feature: domain Description: Phage_int_SAM_4 Location: 1428-1674 bp Feature: domain Description: INT_IntI_C Location: 1710-2097 bp Feature: domain Description: INT_IntI_C Location: 1710-2097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193)

Seq: FCOX02000004.1 (303142 bp)
Overview 1 RT 1: 217017-220525 bp Neighborhood of RT #1 [217017, 220557] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 217017-217736 bp Feature: gene Location: 217768-218100 bp Feature: gene Location: 218373-219656 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 218745-219432 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 218745-219432 bp Feature: gene Location: 219703-220077 bp Feature: domain Description: Avd_like Location: 219730-220036 bp Feature: domain Description: Avd_like Location: 219730-220036 bp Feature: gene Location: 220084-220557 bp Feature: domain Description: DUF1566 Location: 220345-220525 bp Feature: domain Description: DUF156 6 Location: 220345-220525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: FCOX02000079.1 (27536 bp)
Overview 1 RT 1: 1-4031 bp Neighborhood of RT #1 [1, 4054] RVT-GII GIIM HNHc uvrC pgsA Feature: gene Location: 1-1062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73-355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 3-355 bp Feature: domain Description: GIIM Note: maturase Location: 409-640 bp Feature: domain Description: GIIM Note: maturase Location: 409-640 bp Feature: domain Description: HNHc Note: nucleases Location: 856-1024 bp Feature: domain Description: HNHc Note: nucleases Location: 856-1024 bp Feature: gene Location: 1239-3347 bp Feature: domain Description: uvrC Location: 1293-3345 bp Feature: domain Description: uvrC Location: 1293-3345 bp Feature: gene Location: 3458-4054 bp Feature: domain Description: pgsA Location: 3467-4031 bp Feature: domain Description: pgsA Location: 3467 -4031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), uvrC (TIGR00194), pgsA (TIGR00560)

Seq: FCOX02000185.1 (3931 bp)
Overview 1 RT 1: 1531-3828 bp Neighborhood of RT #1 [1531, 3929] RVT-GII GIIM Feature: gene Location: 1531-1851 bp Feature: gene Location: 2315-2494 bp Feature: gene Location: 2496-3929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2862-3555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28 62-3555 bp Feature: domain Description: GIIM Note: maturase Location: 3636-3828 bp Feature: domain Description: GIIM Note: maturase Location: 3636-38 28 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FCOX02000255.1 (1634 bp)
Overview 1 RT 1: 3-1567 bp Neighborhood of RT #1 [3, 1593] RVT-GII GIIM RVT-GII Feature: gene Location: 3-719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69-306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69 -306 bp Feature: domain Description: GIIM Note: maturase Location: 411-621 bp Feature: domain Description: GIIM Note: maturase Location: 411-621 bp Feature: gene Location: 805-1593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1174-1567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1174-1567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FCOX02000050.1 (53848 bp)
Overview 1 RT 1: 289-6336 bp Neighborhood of RT #1 [289, 6359] R_switched_YjbE PilA RVT-GII GIIM HNHc PglL_A Wzy_C Wzy_C_2 moaC Feature: gene Location: 289-999 bp Feature: domain Description: R_switched_YjbE Location: 325-859 bp Feature: domain Description: R_switched_YjbE Location: 325-859 bp Feature: gene Location: 1111-1704 bp Feature: domain Description: PilA Location: 1195-1384 bp Feature: domain Description: PilA Location: 1195-1384 bp Feature: gene Location: 3131-3913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3134-3200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3134-3200 bp Feature: domain Description: GIIM Note: maturase Location: 3251-3485 bp Feature: domain Description: GIIM Note: maturase Location: 3251-3485 bp Feature: domain Description: HNHc Note: nucleases Location: 3716-3869 bp Feature: domain Description: HNHc Note: nucleases Location: 3716-3869 bp Feature: gene Location: 4038-5849 bp Feature: domain Description: PglL_A Location: 4545-4614 bp Feature: domain Description: PglL_A Location: 4545-4614 bp Feature: domain Description: Wzy_C Location: 4662-5145 bp Feature: domain Description: Wzy_C Location: 4662-5145 bp Feature: domain Description: Wzy_C_2 Location: 5211-5715 bp Feature: domain Description: Wzy_C_2 Location: 5211-5715 bp Feature: gene Location: 5862-6359 bp Feature: domain Description: moaC Location: 5868-6336 bp Feature: domain Description: moaC Location: 5868-6336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT R_switched_YjbE (TIGR03717), PilA (COG4969), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PglL_A (pfam15864), Wzy_C (pfam04932), Wzy_C_2 (pfam11846), moaC (TIGR00581)

Seq: FCOX02000207.1 (3052 bp)
Overview 1 RT 1: 403-3051 bp Neighborhood of RT #1 [403, 3051] RVT_N RVT-GII YkfC HNH Feature: gene Location: 403-2103 bp Feature: domain Description: RVT_N Location: 457-700 bp Feature: domain Description: RVT_N Location: 457-700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1381 bp Feature: domain Description: YkfC Location: 1498-1678 bp Feature: domain Description: YkfC Location: 1498-1678 bp Feature: domain Description: HNH Note: nucleases Location: 1924-2044 bp Feature: domain Description: HNH Note: nucleases Location: 1924-2044 bp Feature: gene Location: 2054-2533 bp Feature: gene Location: 2797-3051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844)

Seq: FCOX02000304.1 (954 bp)
Overview 1 RT 1: 1-379 bp Neighborhood of RT #1 [1, 951] RVT-GII Feature: gene Location: 1-951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73-379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73-379 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: FCOX02000307.1 (929 bp)
Overview 1 RT 1: 1-748 bp Neighborhood of RT #1 [1, 748] RVT-GII Feature: gene Location: 1-522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-505 bp Feature: gene Location: 578-748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: FCOX02000221.1 (2402 bp)
Overview 1 RT 1: 84-2351 bp Neighborhood of RT #1 [84, 2351] RVT_N RVT-GII GIIM Feature: gene Location: 84-1793 bp Feature: domain Description: RVT_N Location: 144-387 bp Feature: domain Description: RVT_N Location: 14 4-387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432-1071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432-1071 bp Feature: domain Description: GIIM Note: maturase Location: 1122-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1122-1356 bp Feature: gene Location: 1878-2351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: FCOX02000281.1 (1266 bp)
Overview 1 RT 1: 3-1265 bp Neighborhood of RT #1 [3, 1264] RVT-GII Feature: gene Location: 3-167 bp Feature: gene Location: 563-1264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 836-1265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 836-1265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: FCOX02000311.1 (910 bp)
Overview 1 RT 1: 2-602 bp Neighborhood of RT #1 [2, 823] RVT-GII GIIM Feature: gene Location: 2-823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-317 bp Feature: domain Description: GIIM Note: maturase Location: 368-602 bp Feature: domain Description: GIIM Note: maturase Location: 368-602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FCOX02000234.1 (2059 bp)
Overview 1 RT 1: 33-1358 bp Neighborhood of RT #1 [33, 1358] RVT-GII Feature: gene Location: 33-740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309-705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309-705 bp Feature: gene Location: 758-976 bp Feature: gene Location: 1083-1358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: FCOX02000039.1 (79400 bp)
Overview 1 RT 1: 75932-79400 bp Neighborhood of RT #1 [75932, 79399] PRK08273 RVT_N RVT-GII Feature: gene Location: 75932-77776 bp Feature: domain Description: PRK08273 Location: 75983-77771 bp Feature: domain Description: PRK08273 Location: 75983-77771 bp Feature: gene Location: 77806-78378 bp Feature: gene Location: 78362-79399 bp Feature: domain Description: RVT_N Location: 78710-78947 bp Feature: domain Description: RVT_N Location: 78710-78947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78998-79400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78998-79400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08273 (thiamine pyrophosphate protein; Provisional), RVT_N (pfam13655), RVT-GII

Seq: FCOX02000302.1 (968 bp)
Overview 1 RT 1: 286-865 bp Neighborhood of RT #1 [286, 966] RVT-CRISPR-like GIIM Feature: gene Location: 286-966 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 358-595 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 358-595 bp Feature: domain Description: GIIM Note: maturase Location: 652-865 bp Feature: domain Description: GIIM Note: maturase Location: 652-865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GIIM (pfam08388)

Seq: FCOX02000006.1 (234360 bp)
Overview 1 RT 1: 8780-13351 bp Neighborhood of RT #1 [8780, 13392] RVT-GII GIIM BKACE DUF3303 Feature: gene Location: 8780-9175 bp Feature: gene Location: 9884-10039 bp Feature: gene Location: 10573-11865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10813-11434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10813-11434 bp Feature: domain Description: GIIM Note: maturase Location: 11485-11689 bp Feature: domain Description: GIIM Note: maturase Location: 11485-11689 bp Feature: gene Location: 12077-12913 bp Feature: domain Description: BKACE Location: 12104-12911 bp Feature: domain Description: BKACE Location: 12104-12911 bp Feature: gene Location: 13108-13392 bp Feature: domain Description: DUF3303 Location: 13114-13351 bp Feature: domain Description: DUF3303 Location: 13114-13351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), BKACE (pfam05853), DUF3303 (pfam11746)