myRT

myRT report for GCA_900049235.1_C.symbiosum_MappedAssembly

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Seq: FIZZ01000019.1 (56572 bp)
Overview 1 RT 1: 2-3860 bp Neighborhood of RT #1 [2, 4093] T4SS-DNA_transf RVT-GII RVT-GII TraG-D_C Feature: gene Location: 2-772 bp Feature: domain Description: T4SS-DNA_transf Location: 44-716 bp Feature: domain Description: T4SS-DNA_transf Location: 44-71 6 bp Feature: gene Location: 1529-2248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1838-2225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 838-2225 bp Feature: gene Location: 2251-2829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2254-2593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2254-2593 bp Feature: gene Location: 2852-3439 bp Feature: gene Location: 3449-4093 bp Feature: domain Description: TraG-D_C Location: 3542-3860 bp Feature: domain Description: TraG-D_C Location: 3542-3860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: FIZZ01000026.1 (2840 bp)
Overview 1 RT 1: 2-2557 bp Neighborhood of RT #1 [2, 2557] RVT-GII GIIM Feature: gene Location: 2-376 bp Feature: gene Location: 526-1983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 907-1534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 907-1534 bp Feature: domain Description: GIIM Note: maturase Location: 1588-1816 bp Feature: domain Description: GIIM Note: maturase Location: 1588-1816 bp Feature: gene Location: 2021-2203 bp Feature: gene Location: 2243-2557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: FIZZ01000031.1 (2123 bp)
Overview 1 RT 1: 31-2120 bp Neighborhood of RT #1 [31, 2120] RVT-GII Feature: gene Location: 31-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289-976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289-976 bp Feature: gene Location: 1630-1947 bp Feature: gene Location: 1977-2120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: FIZZ01000004.1 (338238 bp)
Overview 1 RT 1: 87331-92064 bp Neighborhood of RT #1 [87331, 92064] RVT-DGRs Feature: gene Location: 87331-87495 bp Feature: gene Location: 88196-88363 bp Feature: gene Location: 88535-89737 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 88754-89447 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 88754 -894 4 7 bp Feature: gene Location: 91450-91656 bp Feature: gene Location: 91693-92064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: FIZZ01000014.1 (164520 bp)
Overview 1 RT 1: 91404-97074 bp Neighborhood of RT #1 [91404, 97115] PRK00093 cyano_FeS_chp group_II_RT_mat RVT-GII GIIM PRK06827 Feature: gene Location: 91404-92738 bp Feature: domain Description: PRK00093 Location: 91419-92730 bp Feature: domain Description: PRK00093 Location: 91419-92730 bp Feature: gene Location: 92795-94147 bp Feature: domain Description: cyano_FeS_chp Location: 92819-94076 bp Feature: domain Description: cyano_FeS_chp Location: 92819-94076 bp Feature: gene Location: 94263-95024 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 94353-94443 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 9435 3-94443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94521-94665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 945 21-94665 bp Feature: domain Description: GIIM Note: maturase Location: 94743-94950 bp Feature: domain Description: GIIM Note: maturase Location: 94743-9495 0 bp Feature: gene Location: 95464-95691 bp Feature: gene Location: 95901-97115 bp Feature: domain Description: PRK06827 Location: 95928-97074 bp Feature: domain Description: PRK06827 Location: 95 928-97074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: FIZZ01000006.1 (328298 bp)
Overview 1 RT 1: 36030-38625 bp 2 RT 2: 104551-108875 bp Neighborhood of RT #1 [36030, 38630] Phage_holin_Dp1 RVT-DGRs Phage_XkdX Neighborhood of RT #2 [104551, 109294] RVT-DGRs DUF2313 Feature: gene Location: 36030-36245 bp Feature: domain Description: Phage_holin_Dp1 Location: 36039-36225 bp Feature: domain Description: Phage_holin_Dp1 Location: 36 039-36 225 bp Feature: gene Location: 36232-36567 bp Feature: gene Location: 36593-37789 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36788-37511 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36 788-37511 bp Feature: gene Location: 38002-38490 bp Feature: gene Location: 38487-38630 bp Feature: domain Description: Phage_XkdX Location: 38508-38625 bp Feature: domain Description: Phage_XkdX Location: 38508-386 25 bp Feature: gene Location: 104551-104727 bp Feature: gene Location: 104727-104861 bp Feature: gene Location: 105103-106395 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 105409-106111 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 105409-106 111 bp Feature: gene Location: 106680-108485 bp Feature: gene Location: 108500-109294 bp Feature: domain Description: DUF2313 Location: 108518-108875 bp Feature: domain Description: DUF2313 Location: 108518-108875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: FIZZ01000015.1 (149644 bp)
Overview 1 RT 1: 1-157 bp Neighborhood of RT #1 [1, 408] RVT-GII Feature: gene Location: 1-408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 -157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: FIZZ01000029.1 (2338 bp)
Overview 1 RT 1: 2-2306 bp Neighborhood of RT #1 [2, 2317] RVT-GII DEDD_Tnp_IS110 COG3547 group_II_RT_mat Feature: gene Location: 2-325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41-308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41-308 bp Feature: gene Location: 446-1627 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 461-929 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 461-929 bp Feature: domain Description: COG3547 Location: 1169-1493 bp Feature: domain Description: COG3547 Location: 1169-1493 bp Feature: gene Location: 1943-2317 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1946-2306 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1946-2306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: FIZZ01000009.1 (232186 bp)
Overview 1 RT 1: 119951-122137 bp Neighborhood of RT #1 [119951, 122244] Avd_like RVT-DGRs DUF16 Feature: gene Location: 119951-120286 bp Feature: domain Description: Avd_like Location: 119969-120275 bp Feature: domain Description: Avd_like Location: 119 9 69 -120275 bp Feature: gene Location: 120304-120444 bp Feature: gene Location: 120509-121675 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 120776-121439 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 120776-121439 bp Feature: gene Location: 121683-121895 bp Feature: gene Location: 121936-122244 bp Feature: domain Description: DUF16 Location: 121951-122137 bp Feature: domain Description: DUF16 Location: 1219 51-122137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: FIZZ01000016.1 (116633 bp)
Overview 1 RT 1: 1-3238 bp 2 RT 2: 37367-42520 bp Neighborhood of RT #1 [1, 3238] VirD4 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #2 [37367, 42522] MviM MviM LysR RVT-Retrons YuiF Feature: gene Location: 1-270 bp Feature: domain Description: VirD4 Location: 43-241 bp Feature: domain Description: VirD4 Location: 43-241 bp Feature: gene Location: 361-2178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 625-1444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 625-1444 bp Feature: domain Description: Intron_maturas2 Location: 1516-1819 bp Feature: domain Description: Intron_maturas2 Location: 1516-1819 bp Feature: domain Description: HNHc Note: nucleases Location: 1999-2143 bp Feature: domain Description: HNHc Note: nucleases Location: 1999-2143 bp Feature: gene Location: 2217-2483 bp Feature: gene Location: 2738-3238 bp Feature: gene Location: 37367-38599 bp Feature: domain Description: MviM Location: 37388-37685 bp Feature: domain Description: MviM Location: 37388-37685 bp Feature: domain Description: MviM Location: 37760-38543 bp Feature: domain Description: MviM Location: 37760-38543 bp Feature: gene Location: 38921-39865 bp Feature: domain Description: LysR Location: 38960-39818 bp Feature: domain Description: LysR Location: 38960-39818 bp Feature: gene Location: 39913-40899 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40078-40633 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40078-40633 bp Feature: gene Location: 40927-41139 bp Feature: gene Location: 41197-42522 bp Feature: domain Description: YuiF Location: 41218-42520 bp Feature: domain Description: YuiF Location: 41218-42520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT