myRT

myRT report for GCA_900066615.1_14207_7_13

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Seq: FMHD01000017.1 (94415 bp)
Overview 1 RT 1: 53829-55545 bp 2 RT 2: 87942-92045 bp Neighborhood of RT #1 [53829, 55545] DUF3990 group_II_RT_mat RVT-GII Neighborhood of RT #2 [87942, 92053] RVT-DGRs CBAH YjbM Feature: gene Location: 53829-53984 bp Feature: domain Description: DUF3990 Location: 53832-53973 bp Feature: domain Description: DUF3990 Location: 53832-53973 bp Feature: gene Location: 53954-54193 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 53996-54179 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 53996-541 79 bp Feature: gene Location: 54368-54796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54371-54782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54371 -54782 bp Feature: gene Location: 54902-55108 bp Feature: gene Location: 55411-55545 bp Feature: gene Location: 87942-88538 bp Feature: gene Location: 88480-88851 bp Feature: gene Location: 88844-90043 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 89039-89762 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 89039-89762 bp Feature: gene Location: 90512-91339 bp Feature: domain Description: CBAH Location: 90515-91298 bp Feature: domain Description: CBAH Location: 9051 5-91 298 bp Feature: gene Location: 91373-92053 bp Feature: domain Description: YjbM Location: 91430-92045 bp Feature: domain Description: YjbM Location: 91 430-92045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3990 (pfam13151), group_II_RT_mat (TIGR04416), RVT-GII, RVT-DGRs, CBAH (pfam02275), YjbM (COG2357)

Seq: FMHD01000034.1 (20678 bp)
Overview 1 RT 1: 7050-10478 bp Neighborhood of RT #1 [7050, 10478] PyrE2 RVT-Retrons NT_Rel-Spo_like Feature: gene Location: 7050-7745 bp Feature: domain Description: PyrE2 Location: 7308-7449 bp Feature: domain Description: PyrE2 Location: 7308-7449 bp Feature: gene Location: 7721-8005 bp Feature: gene Location: 8247-9287 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8484-9036 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8484-9036 bp Feature: gene Location: 9297-9926 bp Feature: domain Description: NT_Rel-Spo_like Location: 9450-9765 bp Feature: domain Description: NT_Rel-Spo_like Location: 9450-9765 bp Feature: gene Location: 10344-10478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PyrE2 (COG0856), RVT-Retrons, NT_Rel-Spo_like (cd05399)

Seq: FMHD01000014.1 (104728 bp)
Overview 1 RT 1: 30475-34080 bp Neighborhood of RT #1 [30475, 34080] Phage_XkdX RVT-DGRs Feature: gene Location: 30475-30627 bp Feature: domain Description: Phage_XkdX Location: 30496-30607 bp Feature: domain Description: Phage_XkdX Location: 3 0496-3 0607 bp Feature: gene Location: 30629-30955 bp Feature: gene Location: 30864-32249 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31077-31821 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 1077-3 1821 bp Feature: gene Location: 32614-33909 bp Feature: gene Location: 33913-34080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs

Seq: FMHD01000023.1 (48820 bp)
Overview 1 RT 1: 687-6669 bp Neighborhood of RT #1 [687, 6686] YSH1 RVT-GII GIIM TIGR03905_4_Cys_4_Cys_4_Cys PRK05584 Feature: gene Location: 687-1625 bp Feature: gene Location: 1721-3331 bp Feature: domain Description: YSH1 Location: 1724-3056 bp Feature: domain Description: YSH1 Location: 1724 -3056 bp Feature: gene Location: 3926-5320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4244-4868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 24 4 -4 868 bp Feature: domain Description: GIIM Note: maturase Location: 4925-5144 bp Feature: domain Description: GIIM Note: maturase Location: 4 925-514 4 bp Feature: gene Location: 5452-5697 bp Feature: domain Description: TIGR03905_4_Cys_4_Cys_4_Cys Location: 5464-5686 bp Feature: domain Description: TIGR03905_4 _Cys_4 _Cys_4 _Cys Location: 54 64 -5686 bp Feature: gene Location: 5973-6686 bp Feature: domain Description: PRK05584 Location: 5982-6669 bp Feature: domain Description: PRK05584 Location: 5982-6669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YSH1 (COG1236), RVT-GII, GIIM (pfam08388), TIGR03905_4_Cys_4_Cys_4_Cys, PRK05584 (5'-methylthioadenosine/adenosylhomocysteine nucleosidase)

Seq: FMHD01000016.1 (95196 bp)
Overview 1 RT 1: 73615-79214 bp Neighborhood of RT #1 [73615, 79214] DUF3801 VirD4 RVT-GII VirD4 Feature: gene Location: 73615-74178 bp Feature: domain Description: DUF3801 Location: 73798-74158 bp Feature: domain Description: DUF3801 Location: 73798-7415 8 bp Feature: gene Location: 74175-74978 bp Feature: domain Description: VirD4 Location: 74400-74940 bp Feature: domain Description: VirD4 Location: 74400-74940 bp Feature: gene Location: 75637-77544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75967-76711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75 967-76711 bp Feature: gene Location: 77760-78746 bp Feature: domain Description: VirD4 Location: 77826-78624 bp Feature: domain Description: VirD4 Location: 77826-78624 bp Feature: gene Location: 78840-79214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII

Seq: FMHD01000037.1 (16989 bp)
Overview 1 RT 1: 5803-9255 bp Neighborhood of RT #1 [5803, 9257] rSAM_mob_pairA DUF5131 rSAM_mob_pairB RVT-GII BaeS NosY Feature: gene Location: 5803-6174 bp Feature: domain Description: rSAM_mob_pairA Location: 5812-5908 bp Feature: domain Description: rSAM_mob_pairA Location: 5812-5908 bp Feature: domain Description: DUF5131 Location: 5908-6085 bp Feature: domain Description: DUF5131 Location: 5908-6 085 bp Feature: gene Location: 6168-7076 bp Feature: domain Description: rSAM_mob_pairB Location: 6198-7050 bp Feature: domain Description: rSAM_mob_pairB Location: 6 198-7050 bp Feature: gene Location: 7198-7377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7228-7297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7228-7297 bp Feature: gene Location: 7533-8441 bp Feature: domain Description: BaeS Location: 7554-8382 bp Feature: domain Description: BaeS Location: 7554-8382 bp Feature: gene Location: 8445-9257 bp Feature: domain Description: NosY Location: 8454-9255 bp Feature: domain Description: NosY Location: 8454-9255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rSAM_mob_pairA (TIGR04471), DUF5131 (pfam07505), rSAM_mob_pairB (TIGR04470), RVT-GII, BaeS (COG0642), NosY (COG1277)

Seq: FMHD01000004.1 (180357 bp)
Overview 1 RT 1: 43527-48358 bp 2 RT 2: 120707-123908 bp Neighborhood of RT #1 [43527, 48363] LexA_DNA_bind PRK03103 RVT_N RVT-GII GIIM HipB COG2932 XRE Neighborhood of RT #2 [120707, 123988] ATC_hydrolase PRK10562 RVT-GII Acetyltransf_1 Feature: gene Location: 43527-43739 bp Feature: domain Description: LexA_DNA_bind Location: 43536-43725 bp Feature: domain Description: LexA_DNA_bind Location: 43536-437 25 bp Feature: gene Location: 43754-45082 bp Feature: domain Description: PRK03103 Location: 43880-45014 bp Feature: domain Description: PRK03103 Location: 43880-45014 bp Feature: gene Location: 45079-46548 bp Feature: domain Description: RVT_N Location: 45124-45361 bp Feature: domain Description: RVT_N Location: 45124-45361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45412-46060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45412-46060 bp Feature: domain Description: GIIM Note: maturase Location: 46111-46345 bp Feature: domain Description: GIIM Note: maturase Location: 46111-46345 bp Feature: gene Location: 47375-48106 bp Feature: domain Description: HipB Location: 47387-47603 bp Feature: domain Description: HipB Location: 47 387 -47 603 bp Feature: domain Description: COG2932 Location: 47759-48071 bp Feature: domain Description: COG2932 Location: 47 7 59-4807 1 bp Feature: gene Location: 48163-48363 bp Feature: domain Description: XRE Location: 48175-48358 bp Feature: domain Description: XRE Location: 4817 5-48358 bp Feature: gene Location: 120707-121021 bp Feature: domain Description: ATC_hydrolase Location: 120770-120983 bp Feature: domain Description: ATC_hydrolase Location: 1207 7 0-120983 bp Feature: gene Location: 121116-121541 bp Feature: domain Description: PRK10562 Location: 121119-121536 bp Feature: domain Description: PRK10562 Location: 121119-121536 bp Feature: gene Location: 121674-122969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121929-122619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121929-122619 bp Feature: gene Location: 123059-123304 bp Feature: gene Location: 123467-123988 bp Feature: domain Description: Acetyltransf_1 Location: 123593-123908 bp Feature: domain Description: Acetyltransf_1 Location: 123593-123908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LexA_DNA_bind (pfam01726), PRK03103 (DNA polymerase IV; Reviewed), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HipB (COG1396), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains ), XRE (COG1476), ATC_hydrolase (pfam14196), PRK10562 (putative acetyltransferase; Provisional)
Acetyltransf_1 (pfam00583)