myRT

myRT report for GCA_900077075.1_12082_4_40

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Seq: FKIY01000009.1 (134180 bp)
Overview 1 RT 1: 105382-108482 bp Neighborhood of RT #1 [105382, 108505] RVT-Retrons arc_metj Feature: gene Location: 105382-105516 bp Feature: gene Location: 105528-106478 bp Feature: gene Location: 106636-107415 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106642-107155 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 06642-1 071 55 bp Feature: gene Location: 107682-108308 bp Feature: gene Location: 108314-108505 bp Feature: domain Description: arc_metj Location: 108377-108482 bp Feature: domain Description: arc_metj Location: 1 08377-1 08482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, arc_metj (LOAD_arc_metj)

Seq: FKIY01000023.1 (93943 bp)
Overview 1 RT 1: 45352-50247 bp Neighborhood of RT #1 [45352, 50247] RVT-UG8 PRK09692 Feature: gene Location: 45352-45600 bp Feature: gene Location: 46154-46624 bp Feature: gene Location: 46617-48569 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 47142-47598 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 47142 -47598 bp Feature: gene Location: 48717-49658 bp Feature: domain Description: PRK09692 Location: 48723-49644 bp Feature: domain Description: PRK09692 Location: 4872 3-49644 bp Feature: gene Location: 50080-50247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, PRK09692 (Integrase; provisional)

Seq: FKIY01000090.1 (38899 bp)
Overview 1 RT 1: 26117-36787 bp Neighborhood of RT #1 [26117, 36852] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 26117-27970 bp Feature: domain Description: PRK05658 Location: 26129-27968 bp Feature: domain Description: PRK05658 Location: 26129-27968 bp Feature: gene Location: 28077-31814 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 28185-28842 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 28185-28842 bp Feature: domain Description: PRK09776 Location: 29055-29526 bp Feature: domain Description: PRK09776 Location: 29055-29526 bp Feature: domain Description: PAS Location: 29571-30108 bp Feature: domain Description: PAS Location: 29571-3 0108 bp Feature: domain Description: PRK10060 Location: 30117-31764 bp Feature: domain Description: PRK10060 Location: 3 0117-3 1764 bp Feature: gene Location: 32895-34580 bp Feature: domain Description: RVT_N Location: 32952-33192 bp Feature: domain Description: RVT_N Location: 3 2952-3 3 192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33240-33876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 240-3 3 876 bp Feature: domain Description: GIIM Note: maturase Location: 33930-34161 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 93 0-3 4161 bp Feature: domain Description: HNH Note: nucleases Location: 34413-34551 bp Feature: domain Description: HNH Note: nucleases Location: 3 4413 -3 4551 bp Feature: gene Location: 35303-36424 bp Feature: domain Description: COG3177 Location: 35321-36413 bp Feature: domain Description: COG3 177 Location: 3 53 21-3 6413 bp Feature: gene Location: 36517-36852 bp Feature: domain Description: NERD Location: 36616-36787 bp Feature: domain Description: NERD Location: 3 6616-3 6787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )
NERD (pfam08378)