myRT

myRT report for GCA_900079095.1_E.gemina.ts

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Seq: FKIP01000606.1 (5626 bp)
Overview 1 RT 1: 2173-5410 bp Neighborhood of RT #1 [2173, 5410] Avd_like RVT-DGRs YfmG Feature: gene Location: 2173-2556 bp Feature: gene Location: 2510-2917 bp Feature: domain Description: Avd_like Location: 2534-2840 bp Feature: domain Description: Avd_like Location: 2534-2840 bp Feature: gene Location: 2914-4131 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3250-3898 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3250-3898 bp Feature: gene Location: 4171-4323 bp Feature: domain Description: YfmG Location: 4177-4282 bp Feature: domain Description: YfmG Location: 41 77-4282 bp Feature: gene Location: 4385-5410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, YfmG (COG1262)

Seq: FKIP01001262.1 (3055 bp)
Overview 1 RT 1: 290-2308 bp Neighborhood of RT #1 [290, 2361] RVT-UG4 HicB_lk_antitox Feature: gene Location: 290-436 bp Feature: gene Location: 829-1659 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 928-1378 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 92 8-1378 bp Feature: gene Location: 1697-2023 bp Feature: gene Location: 2101-2361 bp Feature: domain Description: HicB_lk_antitox Location: 2107-2308 bp Feature: domain Description: HicB_lk_antitox Location: 2 107-2 308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, HicB_lk_antitox (pfam15919)

Seq: FKIP01001264.1 (6616 bp)
Overview 1 RT 1: 236-6504 bp Neighborhood of RT #1 [236, 6614] LysM Peptidase_C14 YfmG RVT-DGRs Hrd YfmG YfmG Feature: gene Location: 236-1618 bp Feature: domain Description: LysM Location: 575-710 bp Feature: domain Description: LysM Location: 575-710 bp Feature: domain Description: Peptidase_C14 Location: 911-1553 bp Feature: domain Description: Peptidase_C14 Location: 911-1553 bp Feature: gene Location: 1799-2740 bp Feature: domain Description: YfmG Location: 2081-2729 bp Feature: domain Description: YfmG Location: 2081-2729 bp Feature: gene Location: 2872-3891 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3082-3673 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 082-3 673 bp Feature: gene Location: 3866-4372 bp Feature: domain Description: Hrd Location: 4106-4304 bp Feature: domain Description: Hrd Location: 4106-43 04 bp Feature: gene Location: 4377-6614 bp Feature: domain Description: YfmG Location: 4929-5580 bp Feature: domain Description: YfmG Location: 4929-5580 bp Feature: domain Description: YfmG Location: 5874-6504 bp Feature: domain Description: YfmG Location: 5874-6504 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysM (smart00257), Peptidase_C14 (pfam00656), YfmG (COG1262), RVT-DGRs, Hrd (LOAD_Hrd)

Seq: FKIP01000919.1 (11627 bp)
Overview 1 RT 1: 188-3307 bp Neighborhood of RT #1 [188, 3345] RVT-GII Intron_maturas2 HNHc PinE COG1569 Feature: gene Location: 188-1978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368-1199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368-1199 bp Feature: domain Description: Intron_maturas2 Location: 1286-1610 bp Feature: domain Description: Intron_maturas2 Location: 1286-1610 bp Feature: domain Description: HNHc Note: nucleases Location: 1715-1901 bp Feature: domain Description: HNHc Note: nucleases Location: 1715-1901 bp Feature: gene Location: 2112-2804 bp Feature: domain Description: PinE Location: 2130-2700 bp Feature: domain Description: PinE Location: 2130-2700 bp Feature: gene Location: 2872-3345 bp Feature: domain Description: COG1569 Location: 2905-3307 bp Feature: domain Description: COG1569 Location: 2905-3307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PinE (COG1961), COG1569 (Predicted nucleic acid-binding protein, contains PIN domain )

Seq: FKIP01000723.1 (7212 bp)
Overview 1 RT 1: 46-6755 bp Neighborhood of RT #1 [46, 6868] RVT-GII GIIM HNHc Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like RVT_N RVT-GII INT_Rci_Hp1_C Feature: gene Location: 46-1674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283-964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283-964 bp Feature: domain Description: GIIM Note: maturase Location: 1033-1249 bp Feature: domain Description: GIIM Note: maturase Location: 1033-1249 bp Feature: domain Description: HNHc Note: nucleases Location: 1486-1636 bp Feature: domain Description: HNHc Note: nucleases Location: 1486-1636 bp Feature: gene Location: 1810-2820 bp Feature: domain Description: Phage_int_SAM_1 Location: 1855-2107 bp Feature: domain Description: Phage_int_SAM_1 Location: 185 5 -2107 bp Feature: domain Description: INT_RitC_C_like Location: 2188-2740 bp Feature: domain Description: INT_RitC_C_like Location: 2188-2740 bp Feature: gene Location: 2817-3800 bp Feature: domain Description: INT_RitB_C_like Location: 3168-3753 bp Feature: domain Description: INT_RitB_C_like Location: 3168-375 3 bp Feature: gene Location: 3793-5052 bp Feature: domain Description: Phage_int_SAM_1 Location: 4162-4402 bp Feature: domain Description: Phage_int_SAM_1 Location: 4162-4402 bp Feature: domain Description: INT_RitA_C_like Location: 4486-5026 bp Feature: domain Description: INT_RitA_C_like Location: 4486-5 026 bp Feature: gene Location: 5162-5788 bp Feature: domain Description: RVT_N Location: 5219-5465 bp Feature: domain Description: RVT_N Location: 5 219-5 465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5507-5726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 5 07-5 726 bp Feature: gene Location: 6491-6868 bp Feature: domain Description: INT_Rci_Hp1_C Location: 6542-6755 bp Feature: domain Description: INT_Rci_Hp1_C Location: 65 42-675 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), INT_RitA_C_like (cd01188), RVT_N (pfam13655), INT_Rci_Hp1_C (cd00796)

Seq: FKIP01000109.1 (7881 bp)
Overview 1 RT 1: 1-6445 bp Neighborhood of RT #1 [1, 6690] RVT-CRISPR Cas_Cas1 TIGR03986 Csm3_III-A Csm3_III-A Csm3_III-A Feature: gene Location: 1-2826 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1027-1630 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1027-16 30 bp Feature: domain Description: Cas_Cas1 Location: 1939-2779 bp Feature: domain Description: Cas_Cas1 Location: 1939-2779 bp Feature: gene Location: 2829-5075 bp Feature: domain Description: TIGR03986 Location: 2847-4731 bp Feature: domain Description: TIGR03986 Location: 2847-4731 bp Feature: gene Location: 5062-6690 bp Feature: domain Description: Csm3_III-A Location: 5074-5284 bp Feature: domain Description: Csm3_III-A Location: 5074-5284 bp Feature: domain Description: Csm3_III-A Location: 5371-5683 bp Feature: domain Description: Csm3_III-A Location: 5371-56 83 bp Feature: domain Description: Csm3_III-A Location: 5920-6445 bp Feature: domain Description: Csm3_III-A Location: 5920-6 445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas_Cas1 (pfam01867), TIGR03986 (CRISPR-associated protein), Csm3_III-A (cd09684)